Table 2.
Characteristics of satellite DNA families identified in C. europaea.
| Genome proportion [%] a | TAREAN confidence | monomer length [bp] | proportion of AT [%] | |
|---|---|---|---|---|
| CUS-TR24 | 15.51 | low | 389 | 66.2 |
| CUS-TR2 | 1.66 | high | 170 | 64.8 |
| (TAA)n | 0.68 a | – | 3 | 100.0 |
| CUS-TR65 | 0.04 | high | 1714 | 69.1 |
| CUS-TR25 | 0.02 | high | 173 | 74.5 |
| CUS-TR66 | 0.02 | high | 1047 | 70.6 |
| CUS-TR67 | 0.01 | low | 322 | 71.8 |
a
Genome proportions were estimated from the proportion of reads in the respective RepeatExplorer cluster relative to the total number of reads. The exception was the (TAA)n microsatellite, which was calculated using TRF and TRAP.