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. 2020 Jan 28;8:e8465. doi: 10.7717/peerj.8465

Figure 3. Phylogenetic and conserved motif analyses of jatropha, castor, cassava, and arabidopsis Lhc superfamily proteins.

Figure 3

(A) Phylogenetic analysis of Lhca, Lhcb, PsbS, ELIP, OHP, SEP, Psb33, and FCII subfamilies; (B) Distribution of conserved motifs. Sequence alignment was performed using MUSCLE and unrooted phylogenetic trees were constructed using MEGA7 (maximum likelihood method; bootstrap, 1,000 replicates). Only bootstrap values at nodes supported by a posterior probability of ≥50% are given. The distance scale denotes the number of amino acid substitutions per site. The name of each OG is indicated next to the corresponding group. OG: orthologous group.