Table 4.
Genome assembly versions comparison of Sebastes schlegelii
| Dataset | Metric | FALCON+FragScaff+Lachesis+Pilon | Wtdbg2+FragScaff+Lachesis+Pilon |
|---|---|---|---|
| S. schlegelii | Contig N50 (Mb) | 2.92 | 15.39 |
| Illumina reads | Scaffold N50 (Mb) | 35.63 | 33.81 |
| Pacbio reads | Assembled genome size (Mb) | 848.31 | 784.94 |
| 10× Genomics | Reads mapping rate (%) | 97.93 | 98.29 |
| Hi-C | Genome coverage (%) | 99.61 | 99.36 |
| GC content (%) | 40.75 | 40.81 | |
| Homology SNP (%) | 0.00038 | 0.0009 | |
| N (%) | 0.52 | 0.18 | |
| CEGMA evaluate (%) | 92.34 | 94.76 | |
| BUSCO genome completence | 2,586 (95.5%) | 2,586 (98.0%) |