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. Author manuscript; available in PMC: 2021 Feb 15.
Published in final edited form as: Mol Cell Endocrinol. 2019 Dec 9;502:110667. doi: 10.1016/j.mce.2019.110667

Table 2:

KATP channel cryoEM structures

Constructs Ligands (PDB/ EMDB ID; resolution) Structure highlights Reference
hamster SUR1 (Q608K)+mouse Kir6.2 Glibenclamide (5WUA/EMD-6689; 5.6Å) Kir6.2 closed and SUR1 inward-facing
Glibenclamide and PIP2 density tentatively assigned; however, glibenclamide density assignment was later corrected in Wu et al.
[65]
hamsterSUR1+ratKir6.2 Glibenclamide+ATP (5TWV/5.8Å) Resolved ATP cryoEM density in Kir6.2 [67]
hamsterSUR1+ratKir6.2 Glibenclamide+ATP (6BAA/EMD-7073; 3.7Å) Resolved glibenclamide cryoEM density in SUR1 [66]
humanSUR1-(6aa linker)-humanKir6.2 fusion1 MgATP+PIP2 Class 1: quatrefoil (6C3O/EMD-7339; 3.9Å) Class 2: propeller (6C3P/EMD-7338; 5.6Å) SUR1’s NBDs dimerized, with MgATP bound at NBD1 and MgADP at NBD2; Kir6.2 closed, bound to ATP
Two conformations were resolved: quatrefoil and propeller, with the quatrefoil form being the dominant class
[64]
hamsterSUR1-(39aa linker)-mouseKir6.2 fusion1 ATPγS (5YW8/EM D-6848; 4.4Å)
Glibenclamide/ATPγS (5YKE/EMD-6831; 4.1Å)
MgADP/NN414/PIP2 (5YWC/EMD-6852; 4.3Å)
Glibenclamide density assigned
Only propeller-like conformation was observed in MgADP bound, NBDs-dimerized structure
Tentative assignment of NN414 density
[68]
hamsterSUR1-(39aa linker)-mouseKir6.2 fusion Repaglinide+ATPγS (6JB1/EMD-9787; 3.3Å) Repaglinide density assigned [63]
hamsterSUR1+ratKir6.2 SUR1 bound to: Glibenclamide+ATP SUR1 NBD1 bound to ATP in all structures except the apo state structure [52]
(6PZA/EM D-20530; 3.7Å)
Repaglinide+ATP (6PZ9/EMD-20528; 3.7Å)
Carbamazepine+ATP (6PZC/EMD-20530; 4.3Å)
ATP only (6PZI/EMD-20535; 4.5Å)
Apo (6PZB/EMD-20533; 4.6Å)
Glibenclamide, repaglinide, and carbamazepine cryoEM density found in the same binding pocket, and no density observed in the pocket in ATP only or apo state structures
Kir6.2 N-term density assigned in the drug-bound structures
1

Only the dominant class or the best resolution structure for each liganded state is included.