Skip to main content
. 2020 Jan 28;30(4):1013–1026.e7. doi: 10.1016/j.celrep.2019.12.023
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

VL4 Rat anti-LCMV-NP Dr. D.D. Pinschewer (Battegay et al., 1991) N/A
Goat anti-Rat IgG-HRP Jackson Immunoresearch Cat#112-035-003; RRID: AB_2338128
Goat anti-Human IgG, Fc gamma-specific Jackson Immunoresearch Cat#109-005-098; RRID: AB_2337541
Goat anti-mouse IgG-HRP Jackson Immunoresearch Cat#115-035-205; RRID: AB_2338513
WEN-1 Dr. D.D. Pinschewer (Eschli et al., 2007) N/A
WEN-3 Dr. D.D. Pinschewer (Seiler et al.,1998) N/A
WEN-1UA This paper N/A
WEN-3UA This paper N/A
MOPC-21 BioXcell Cat#BE0083; RRID: AB_1107784
KL25 Dr. D.D. Pinschewer (Bruns et al.,1983) N/A
KL25-W104L This paper N/A
KL25-F106L This paper N/A
KL25-Y108S This paper N/A
Anti-mouse CD138 BV605 Biolegend Cat#142516; RRID: AB_2562337
Anti-mouse B220 PE BD Biosciences Cat#553089; RRID: AB_394619
Anti-mouse IgM PercP-e710 eBioscience Cat#46-5790-82; RRID: AB_1834435
Anti-mouse IgD APCCy7 BioLegend Cat#405716; RRID: AB_10662544
Anti-mouse GL-7 eF450 eBioscience Cat#48-5902-82; RRID: AB_10870775
Anti-mouse B220 PECy7 BioLegend Cat#103222; RRID: AB_313005
Anti-mouse GL-7 AF647 BioLegend Cat#144606; RRID: AB_2562185
Anti-mouse CD95 PE BD Biosciences Cat#554258; RRID: AB_395330
Anti-mouse CD45.1 BV785 BioLegend Cat#110743; RRID: AB_2563379
Anti-mouse CD45.2 AF700 BioLegend Cat#109822; RRID: AB_493731
Anti-mouse CD95 PECy7 BD Biosciences Cat#557653; RRID: AB_396768
Anti-mouse B220 AF700 BioLegend Cat#103232; RRID: AB_493717
Ani-mouse CD45.1 PE BD Biosciences Cat#553776; RRID: AB_395044
Anti-mouse CD45.2 BV785 BioLegend Cat#109839; RRID: AB_2562604
Anti-mouse B220 FITC BD Bioscience Cat#553088; RRID: AB_394618
Anti-mouse CD3 FITC BD Bioscience Cat#553088; RRID: AB_394594
Anti-mouse CD45.1 Biotin BioLegend Cat#110703; RRID: AB_313492
Biotinylated Peanut Agglutinin (PNA) Vector Laboratories Cat#B-1075; RRID:AB_2313597
Anti-mouse CD38 PerCP/Cy5.5 BioLegend Cat#102721; RRID: AB_2563332
Polyclonal rat IgG BioXcell Cat#BE0094; RRID: AB_1107795
Anti-GFP Antibody ICL Cat#RGFP-45ALY-Z
Anti-mouse B220 Alexa Fluor 647 BioLegend Cat#103226; RRID: AB_389330
PNA Alexa Fluor 488 ThermoFischer Scientific Cat#L21409; RRID: AB_2315178
Anti-mouse CD16/CD32 BioXcell Cat#BE0307; RRID: AB_2736987

Bacterial and Virus Strains

LCMV rCl13 Dr. D.D. Pinschewer (Flatz et al.,2006) N/A
LCMV rARM Dr. D.D. Pinschewer N/A
LCMV rCl13 Dr. D.D. Pinschewer (Hangartner et al.,2006) N/A
LCMV rARM Dr. D.D. Pinschewer (Hangartner et al.,2006) N/A
Vaccinia virus Dr. D.D. Pinschewer (Pinschewer er al., 1999) N/A
Vesicular stomatitis virus Dr. D.D. Pinschewer (Charan et al., 1987) N/A

Chemicals, Peptides, and Recombinant Proteins

Heparin Na 25000 I.E./5 ml B. Braun Medical Cat#B01AB01
DAB DAKO Cat#K5001
ABTS Thermo Scientific Cat#34026
Collagenase D Roche Cat#11088858001
DNaseI Calbiochem Cat#260913
TRI reagent LS Sigma-Aldrich Cat#T3934-100ML
Tactin-XT Iba N/A
Tamoxifen-NOLVADEX AstraZeneca N/A
Clinoleic Baxter Cat#FDB9501
Tissue-freezing-medium Leica Microsystems Cat#14020108926
GP-1-Fc Dr. D.D. Pinschewer (Eschli et al., 2007) N/A
WE-GP-Fc Dr. D.D. Pinschewer (Hangartner et al., 2006) N/A
WE-GP-Fc Dr. D.D. Pinschewer (Hangartner et al., 2006) N/A
WE-GP-StreptagII Dr. D.D. Pinschewer (Sommerstein et al., 2015) N/A
LCMV-NP Dr. D.D. Pinschewer (Fallet et al.,2016) N/A
Brilliant Violet 605 Streptavidin BioLegend Cat#405229; RRID:AB_2313597

Critical Commercial Assays

Zombie UV fixable viability kit BioLegend Cat#423108
Zombie Yellow fixable viability kit BioLegend Cat#423103
Alexa Fluor 647 Antibody Labeling Kit Thermo Fischer Scientific Cat#A20186
CellTrace Violet Cell Proliferation kit Invitrogen Cat#C34557
Pan B Cell Isolation Kit Miltenyi Biotec Cat#130-095-813
AccuScript High-Fidelity Reverse Transcriptase Agilent Technologies Cat#200820
TOPO-TA cloning kit Invitrogen Cat#450641
SPRI select beads Beckman Coulter Cat#B23319
KAPA Library Quantification Kit KAPA Biosystems Cat#KK4824
High Sensitivity NGS Fragment Analysis Kit Advanced Analytical Cat#DNF-474-1000
Q5 Hot Start High-Fidelity DNA polymerase NEB Cat#M0493
Vector® TrueVIEW Autofluorescence Quenching Kit Vector Laboratories Cat#SP-8400
Anti-biotin MicroBeads Miltenyi Biotec Cat#130-090-485

Deposited Data

High-throughput B cell receptor sequencing data NCBI Bioproject Acc#PRJNA579837

Experimental Models: Cell Lines

Hamster: BHK-21 ECACC Cat#85011433; RRID: CVCL_1915
Mouse: NIH 3T3 ATCC Cat#CRL-1658; RRID::CVCL_0594

Experimental Models: Organisms/Strains

Mouse: C57BL/6 The Jackson laboratory JAX: 000664
Mouse: AID-Cre-EYFP, Aicdatm1.1(cre/ERT2)Crey x Gt(ROSA)26Sortm1(EYFP)Cos Dr. J.C. Weill (Dogan et al., 2009) N/A
Mouse: KL25HL; B6-IgH-J < tm1(VDJ-KL25)Zbz x B6J-Tg(KL25L)Tac Dr. D.D. Pinschewer (Fallet et al., 2016) N/A
Mouse: KL25L; B6J-Tg(KL25L)Tac Dr. D.D. Pinschewer (Fallet et al., 2016) N/A
Mouse: KL25HL-AIDrep, Aicdatm1.1(cre/ERT2)Crey x Gt(ROSA)26Sortm1(EYFP)Cos x B6-IgH-J < tm1(VDJ-KL25)Zbz x B6J-Tg(KL25L)Tac This Paper N/A
Mouse: AIDG23S; B6(Cg)-Aicda < tm2.1Hon > Dr. T.Honjo (Wei et al., 2011) N/A
Mouse: AIDG23S/-; B6(Cg)-Aicda < tm2.1Hon > x Aicdatm1.1(cre/ERT2)Crey Dr. T.Honjo (Wei et al., 2011) N/A

Oligonucleotides

VH1: GAGGACTCTGCRGTCTATTWC This Paper N/A
VH3: GAGGACACACCCACATATTAC This Paper N/A
VH5: GAGGACACRGCCATGTATTAC This Paper N/A
VH6: GAAGACACTGGAATTTATTAC This Paper N/A
VH7: GAGGACAGTGCCACTTATTAC This Paper N/A
VH9: ATGAGGACATGGCTACATATTTC This Paper N/A
JH4rev: CACCAGACCTCTCTAGACAGC This Paper N/A
JH4-nested: TGAGACCGAGGCTAGATGCC This Paper N/A
VHDJH2: 5′ primer: CTCTCCGCAGGTGTCCACTCC This Paper N/A
VHDJH2: 3′ primer: AGAAAGAGGTTGTAAGGACTCAC This Paper N/A
JH2-JH4 segment: 5′ primer: CTAGGCACCACTC
TCACAGTC
This Paper N/A
JH2-JH4 segment: 3′ primer: CACCAGACCTCTCT
AGACAGC
This Paper N/A

Recombinant DNA

Mouse HC IgG1 expression plasmid Dr. Shozo Izui N/A
Mouse LC expression plasmid Dr. Shozo Izui N/A

Software and Algorithms

GEN5 BioTek Instruments RRID: SCR_017317
GraphPad Prism 7 GraphPad Software RRID: SCR_002798
FlowJo Tree Star RRID: SCR_008520
Ilumina MiSeq System Illumina MiSeq RRID: SCR_016379
PANDAseq Panda RRID: SCR_002705
CodonCode aligner CodonCode Corporation N/A
IMGT/LIGM-DB IMGT/LIGM-DB RRID: SCR_006931
IgBlast IgBlast RRID: SCR_002873
Adobe Photoshop CS6 Adobe Photoshop RRID: SCR_014199