REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
VL4 Rat anti-LCMV-NP | Dr. D.D. Pinschewer (Battegay et al., 1991) | N/A |
Goat anti-Rat IgG-HRP | Jackson Immunoresearch | Cat#112-035-003; RRID: AB_2338128 |
Goat anti-Human IgG, Fc gamma-specific | Jackson Immunoresearch | Cat#109-005-098; RRID: AB_2337541 |
Goat anti-mouse IgG-HRP | Jackson Immunoresearch | Cat#115-035-205; RRID: AB_2338513 |
WEN-1 | Dr. D.D. Pinschewer (Eschli et al., 2007) | N/A |
WEN-3 | Dr. D.D. Pinschewer (Seiler et al.,1998) | N/A |
WEN-1UA | This paper | N/A |
WEN-3UA | This paper | N/A |
MOPC-21 | BioXcell | Cat#BE0083; RRID: AB_1107784 |
KL25 | Dr. D.D. Pinschewer (Bruns et al.,1983) | N/A |
KL25-W104L | This paper | N/A |
KL25-F106L | This paper | N/A |
KL25-Y108S | This paper | N/A |
Anti-mouse CD138 BV605 | Biolegend | Cat#142516; RRID: AB_2562337 |
Anti-mouse B220 PE | BD Biosciences | Cat#553089; RRID: AB_394619 |
Anti-mouse IgM PercP-e710 | eBioscience | Cat#46-5790-82; RRID: AB_1834435 |
Anti-mouse IgD APCCy7 | BioLegend | Cat#405716; RRID: AB_10662544 |
Anti-mouse GL-7 eF450 | eBioscience | Cat#48-5902-82; RRID: AB_10870775 |
Anti-mouse B220 PECy7 | BioLegend | Cat#103222; RRID: AB_313005 |
Anti-mouse GL-7 AF647 | BioLegend | Cat#144606; RRID: AB_2562185 |
Anti-mouse CD95 PE | BD Biosciences | Cat#554258; RRID: AB_395330 |
Anti-mouse CD45.1 BV785 | BioLegend | Cat#110743; RRID: AB_2563379 |
Anti-mouse CD45.2 AF700 | BioLegend | Cat#109822; RRID: AB_493731 |
Anti-mouse CD95 PECy7 | BD Biosciences | Cat#557653; RRID: AB_396768 |
Anti-mouse B220 AF700 | BioLegend | Cat#103232; RRID: AB_493717 |
Ani-mouse CD45.1 PE | BD Biosciences | Cat#553776; RRID: AB_395044 |
Anti-mouse CD45.2 BV785 | BioLegend | Cat#109839; RRID: AB_2562604 |
Anti-mouse B220 FITC | BD Bioscience | Cat#553088; RRID: AB_394618 |
Anti-mouse CD3 FITC | BD Bioscience | Cat#553088; RRID: AB_394594 |
Anti-mouse CD45.1 Biotin | BioLegend | Cat#110703; RRID: AB_313492 |
Biotinylated Peanut Agglutinin (PNA) | Vector Laboratories | Cat#B-1075; RRID:AB_2313597 |
Anti-mouse CD38 PerCP/Cy5.5 | BioLegend | Cat#102721; RRID: AB_2563332 |
Polyclonal rat IgG | BioXcell | Cat#BE0094; RRID: AB_1107795 |
Anti-GFP Antibody | ICL | Cat#RGFP-45ALY-Z |
Anti-mouse B220 Alexa Fluor 647 | BioLegend | Cat#103226; RRID: AB_389330 |
PNA Alexa Fluor 488 | ThermoFischer Scientific | Cat#L21409; RRID: AB_2315178 |
Anti-mouse CD16/CD32 | BioXcell | Cat#BE0307; RRID: AB_2736987 |
Bacterial and Virus Strains | ||
LCMV rCl13 | Dr. D.D. Pinschewer (Flatz et al.,2006) | N/A |
LCMV rARM | Dr. D.D. Pinschewer | N/A |
LCMV rCl13∗ | Dr. D.D. Pinschewer (Hangartner et al.,2006) | N/A |
LCMV rARM∗ | Dr. D.D. Pinschewer (Hangartner et al.,2006) | N/A |
Vaccinia virus | Dr. D.D. Pinschewer (Pinschewer er al., 1999) | N/A |
Vesicular stomatitis virus | Dr. D.D. Pinschewer (Charan et al., 1987) | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
Heparin Na 25000 I.E./5 ml | B. Braun Medical | Cat#B01AB01 |
DAB | DAKO | Cat#K5001 |
ABTS | Thermo Scientific | Cat#34026 |
Collagenase D | Roche | Cat#11088858001 |
DNaseI | Calbiochem | Cat#260913 |
TRI reagent LS | Sigma-Aldrich | Cat#T3934-100ML |
Tactin-XT | Iba | N/A |
Tamoxifen-NOLVADEX | AstraZeneca | N/A |
Clinoleic | Baxter | Cat#FDB9501 |
Tissue-freezing-medium | Leica Microsystems | Cat#14020108926 |
GP-1-Fc | Dr. D.D. Pinschewer (Eschli et al., 2007) | N/A |
WE-GP-Fc | Dr. D.D. Pinschewer (Hangartner et al., 2006) | N/A |
WE-GP∗-Fc | Dr. D.D. Pinschewer (Hangartner et al., 2006) | N/A |
WE-GP-StreptagII | Dr. D.D. Pinschewer (Sommerstein et al., 2015) | N/A |
LCMV-NP | Dr. D.D. Pinschewer (Fallet et al.,2016) | N/A |
Brilliant Violet 605 Streptavidin | BioLegend | Cat#405229; RRID:AB_2313597 |
Critical Commercial Assays | ||
Zombie UV fixable viability kit | BioLegend | Cat#423108 |
Zombie Yellow fixable viability kit | BioLegend | Cat#423103 |
Alexa Fluor 647 Antibody Labeling Kit | Thermo Fischer Scientific | Cat#A20186 |
CellTrace Violet Cell Proliferation kit | Invitrogen | Cat#C34557 |
Pan B Cell Isolation Kit | Miltenyi Biotec | Cat#130-095-813 |
AccuScript High-Fidelity Reverse Transcriptase | Agilent Technologies | Cat#200820 |
TOPO-TA cloning kit | Invitrogen | Cat#450641 |
SPRI select beads | Beckman Coulter | Cat#B23319 |
KAPA Library Quantification Kit | KAPA Biosystems | Cat#KK4824 |
High Sensitivity NGS Fragment Analysis Kit | Advanced Analytical | Cat#DNF-474-1000 |
Q5 Hot Start High-Fidelity DNA polymerase | NEB | Cat#M0493 |
Vector® TrueVIEW Autofluorescence Quenching Kit | Vector Laboratories | Cat#SP-8400 |
Anti-biotin MicroBeads | Miltenyi Biotec | Cat#130-090-485 |
Deposited Data | ||
High-throughput B cell receptor sequencing data | NCBI Bioproject | Acc#PRJNA579837 |
Experimental Models: Cell Lines | ||
Hamster: BHK-21 | ECACC | Cat#85011433; RRID: CVCL_1915 |
Mouse: NIH 3T3 | ATCC | Cat#CRL-1658; RRID::CVCL_0594 |
Experimental Models: Organisms/Strains | ||
Mouse: C57BL/6 | The Jackson laboratory | JAX: 000664 |
Mouse: AID-Cre-EYFP, Aicdatm1.1(cre/ERT2)Crey x Gt(ROSA)26Sortm1(EYFP)Cos | Dr. J.C. Weill (Dogan et al., 2009) | N/A |
Mouse: KL25HL; B6-IgH-J < tm1(VDJ-KL25)Zbz x B6J-Tg(KL25L)Tac | Dr. D.D. Pinschewer (Fallet et al., 2016) | N/A |
Mouse: KL25L; B6J-Tg(KL25L)Tac | Dr. D.D. Pinschewer (Fallet et al., 2016) | N/A |
Mouse: KL25HL-AIDrep, Aicdatm1.1(cre/ERT2)Crey x Gt(ROSA)26Sortm1(EYFP)Cos x B6-IgH-J < tm1(VDJ-KL25)Zbz x B6J-Tg(KL25L)Tac | This Paper | N/A |
Mouse: AIDG23S; B6(Cg)-Aicda < tm2.1Hon > | Dr. T.Honjo (Wei et al., 2011) | N/A |
Mouse: AIDG23S/-; B6(Cg)-Aicda < tm2.1Hon > x Aicdatm1.1(cre/ERT2)Crey | Dr. T.Honjo (Wei et al., 2011) | N/A |
Oligonucleotides | ||
VH1: GAGGACTCTGCRGTCTATTWC | This Paper | N/A |
VH3: GAGGACACACCCACATATTAC | This Paper | N/A |
VH5: GAGGACACRGCCATGTATTAC | This Paper | N/A |
VH6: GAAGACACTGGAATTTATTAC | This Paper | N/A |
VH7: GAGGACAGTGCCACTTATTAC | This Paper | N/A |
VH9: ATGAGGACATGGCTACATATTTC | This Paper | N/A |
JH4rev: CACCAGACCTCTCTAGACAGC | This Paper | N/A |
JH4-nested: TGAGACCGAGGCTAGATGCC | This Paper | N/A |
VHDJH2: 5′ primer: CTCTCCGCAGGTGTCCACTCC | This Paper | N/A |
VHDJH2: 3′ primer: AGAAAGAGGTTGTAAGGACTCAC | This Paper | N/A |
JH2-JH4 segment: 5′ primer: CTAGGCACCACTC TCACAGTC |
This Paper | N/A |
JH2-JH4 segment: 3′ primer: CACCAGACCTCTCT AGACAGC |
This Paper | N/A |
Recombinant DNA | ||
Mouse HC IgG1 expression plasmid | Dr. Shozo Izui | N/A |
Mouse LC expression plasmid | Dr. Shozo Izui | N/A |
Software and Algorithms | ||
GEN5 | BioTek Instruments | RRID: SCR_017317 |
GraphPad Prism 7 | GraphPad Software | RRID: SCR_002798 |
FlowJo | Tree Star | RRID: SCR_008520 |
Ilumina MiSeq System | Illumina MiSeq | RRID: SCR_016379 |
PANDAseq | Panda | RRID: SCR_002705 |
CodonCode aligner | CodonCode Corporation | N/A |
IMGT/LIGM-DB | IMGT/LIGM-DB | RRID: SCR_006931 |
IgBlast | IgBlast | RRID: SCR_002873 |
Adobe Photoshop CS6 | Adobe Photoshop | RRID: SCR_014199 |