Table 2.
Monoallelic variants identified.
| Patient ID | Gene symbol | Transcript ID | Transcript variant | Protein variant | gnomAD freq. | SIFT | PolyPhen-2 | CADD score | MSC | ACMG classification |
|---|---|---|---|---|---|---|---|---|---|---|
| P2 | NFKB1 | NM_003998.3 | c.950_964del CAAAGTATAAAGATA | p.P317_I322delinsL | 3.313 | 4 | ||||
| P2 | NFKB1 | NM_003998.3 | c.967A>T | p.N323Y | - | D | B | 24.5 | 3.313 | 4 |
| P3 | STAT3 | NM_139276.2 | c.319C>T | p.R107W | - | T | PrD | 25.2 | 15.290 | 3 |
| P10 | TNFAIP3 | NM_006290.3 | c.997dupG | p.A333fs*2 | - | 3.313 | 4 | |||
| P11 | IL17F | NM_052872.3 | c.254C>T | p.T85I | 0.002 | T | B | 22.5 | 3.313 | 3 |
| P12 | IRAK4 | NM_016123.3 | c.1120G>A | p.G374S | 0.001 | D | PrD | 32 | 0.001 | 3 |
| P15 | TTC37 | NM_014639.3 | c.3988_3989delTC | p.S1330fs*14 | - | 4.836 | 4 | |||
| P16 | DDX41 | NM_016222.3 | c.1435C>T | p.R353W | 0.002 | D | PrD | 29.8 | 3.313 | 3 |
| P17 | NLRC3 | NM_178844.3 | c.1189G>A | p.V397M | 0.001 | T | B | 15.9 | 3.313 | 3 |
| P18 | TNFRSF1A | NM_001065.3 | c.1343C>T | p.P448L | 0.002 | T | B | 15 | 0.015 | 3 |
| P18 | PLCG2 | NM_002661.4 | c.2866C>T | p.R956C | 0.002 | T | PrD | 33 | 3.313 | 3 |
D, damaging; T, Tolerated; B, Benign; PoD, Possibly Damaging; PrD, Probably Damaging.
Referencer: CADD, combined annotation dependent depletion, PMID 24487276; PolyPhen-2: PMID 20354512; SIFT: PMID 19561590; MSC, mutation significance cutoff, https://doi.org/10.1038/nmeth.3739; ACMG, American College of Medical Genetics and Genomics, https://doi.org/10.1038/gim.2015.30.