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. 2020 Jan 27;10:3022. doi: 10.3389/fimmu.2019.03022

Table 2.

Monoallelic variants identified.

Patient ID Gene symbol Transcript ID Transcript variant Protein variant gnomAD freq. SIFT PolyPhen-2 CADD score MSC ACMG classification
P2 NFKB1 NM_003998.3 c.950_964del CAAAGTATAAAGATA p.P317_I322delinsL 3.313 4
P2 NFKB1 NM_003998.3 c.967A>T p.N323Y - D B 24.5 3.313 4
P3 STAT3 NM_139276.2 c.319C>T p.R107W - T PrD 25.2 15.290 3
P10 TNFAIP3 NM_006290.3 c.997dupG p.A333fs*2 - 3.313 4
P11 IL17F NM_052872.3 c.254C>T p.T85I 0.002 T B 22.5 3.313 3
P12 IRAK4 NM_016123.3 c.1120G>A p.G374S 0.001 D PrD 32 0.001 3
P15 TTC37 NM_014639.3 c.3988_3989delTC p.S1330fs*14 - 4.836 4
P16 DDX41 NM_016222.3 c.1435C>T p.R353W 0.002 D PrD 29.8 3.313 3
P17 NLRC3 NM_178844.3 c.1189G>A p.V397M 0.001 T B 15.9 3.313 3
P18 TNFRSF1A NM_001065.3 c.1343C>T p.P448L 0.002 T B 15 0.015 3
P18 PLCG2 NM_002661.4 c.2866C>T p.R956C 0.002 T PrD 33 3.313 3

D, damaging; T, Tolerated; B, Benign; PoD, Possibly Damaging; PrD, Probably Damaging.

Referencer: CADD, combined annotation dependent depletion, PMID 24487276; PolyPhen-2: PMID 20354512; SIFT: PMID 19561590; MSC, mutation significance cutoff, https://doi.org/10.1038/nmeth.3739; ACMG, American College of Medical Genetics and Genomics, https://doi.org/10.1038/gim.2015.30.