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. 2020 Feb;6(1):a004754. doi: 10.1101/mcs.a004754

Table 2.

In silico analysis of novel variants

Amino acid change Conservation
SIFT Mutation Taster PolyPhen-2 GERP PhastCon PhyloP
c.215A > G p.(Asp72Gly) Deleterious 0.03 Disease causing 1.00 Possibly damaging 0.948 Conserved 5.65 Conserved 0.999 Conserved 4.839
c.362T > C p.Ile121Thr Deleterious 0 Disease causing 1.00 Probably damaging 0.979 Conserved 6.04 Conserved 1 Conserved 5.252
c.440A > C p.Asn147Thr Deleterious 0 Disease causing 1.00 Probably damaging 1.00 Conserved 6.040 Conserved 1 Conserved 5.253
c.697G > A p.Val233Ile Deleterious 0 Disease causing 1.00 Probably damaging 0.999 Conserved 5.74 Conserved 1 Conserved 6.212

Prediction of pathogenicity of novel variants in RDH12.

(SIFT) Sorting Intolerant from Tolerant, (PolyPhen-2) Polymorphism Phenotyping version 2, (GERP) genomic evolutionary rate profiling.