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. Author manuscript; available in PMC: 2020 Feb 3.
Published in final edited form as: Nat Protoc. 2019 Jun 3;14(7):1991–2014. doi: 10.1038/s41596-019-0169-z

Table 1. Troubleshooting guidance.

Step Problem Possible Reason Solution
26 There are too many embryos to easily process in 50-60 min More mice superovulated than is necessary Only superovulate 10-15 mice per session
27 Embryos are being lost when manipulated using a mouth pipette Pipette tip is flicked against cell culture dish Use a cell culture dish with low edges or an unpturned dish with drops of medium
Embryos are sucked up beyond the tip of the pipette Aspirate a small amount of M2 into the pipette tip and include a small air bubble to sit behind the embryos when manipulating
39 Embryos are not lysed but cell division looks abnormal Embryo patterning differs in the absence of sperm entry Allow the embryos to culture for longer
42 Blastocyst is close to breaching it's zona and hatching The blastocysts were at an optimal stage for acid treatment over night Perform the zona removal, being prepared to take them out of the acid sooner
46 The zona does not dissolve rapidly The acid Tyrodes is not sufficiently warm Warm the acid in an incubator at 37 °C and use a heat plate on the microscope
49 It is hard to visualise the dissolving of the zona Magnification of the microscope is insufficient Use x100 magnification capable objective
50 Zona disappears but then reappears when in M2 Variation in osmotic gradient between mediums may give the impression the zona is shrinking away Ensure the acid is suitably warmed
52 Embryos are lost when retrieving them from the vial Too much medium in vial Use no more than 50 μl in the vial.
Flush the inner sides and lid of the vial with M2 to dislodge and collect embryos that may have got attached to these surfaces