TABLE 2.
Primers and standard used for amplification in one-step RT-qPCR to detect RV and TV bound to PMG-MBs
Step |
Primer or standard | Sequence | Position in the genome | Fragment size (bp) |
---|---|---|---|---|
Quantitative PCR for RV OSU NSP3 for the binding assay | Forward primer JVKF | 5′-CAGTGGTTGAT CT AAAT-3′ | NSP3 (17–36) | 130 |
Reverse primer JVKR | 5′-TCATTGTAATCATATTGAATACCCA-3′ | NSP3 (123–147) | ||
Standard curve for RV OSU NSP3 | Standard sequence for RV OSU NSP3 | 5′-GGCTTTTAATGCTTTTCAGTGGTTGATGCTCAAGATGGAGTCTACTCAACAGATGGCATCTTCTATTATTAACTCTTCTTTTGAAGCTGCAGTTGTCGCTGCAACTTCTACATTAGAATTAATGGGTATTCAATATGATTATAATGAAGTATACACTAGAGTTAAAAGTAAGTTTGATTTTGTAATGGATGATTCTGGTG-3′ | NSP3 | 1,305 |
Quantitative PCR for TV VP1 for the binding assay | Forward primer TVVP1-qPCR-F | 5′-TTGCAGGAGGGTTTCAAGATG-3′ | VP1 (5380–5400) | 110 |
Reverse primer TVVP1-qPCR-R | 5′-CACGGTTTCATTGTCCCCCATA-3′ | VP1 (5468–5490) |