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. 2020 Feb 3;86(4):e02436-19. doi: 10.1128/AEM.02436-19

TABLE 2.

Primers and standard used for amplification in one-step RT-qPCR to detect RV and TV bound to PMG-MBs


Step
Primer or standard Sequence Position in the genome Fragment size (bp)
Quantitative PCR for RV OSU NSP3 for the binding assay Forward primer JVKF 5′-CAGTGGTTGAT CT AAAT-3′ NSP3 (17–36) 130
Reverse primer JVKR 5′-TCATTGTAATCATATTGAATACCCA-3′ NSP3 (123–147)
Standard curve for RV OSU NSP3 Standard sequence for RV OSU NSP3 5′-GGCTTTTAATGCTTTTCAGTGGTTGATGCTCAAGATGGAGTCTACTCAACAGATGGCATCTTCTATTATTAACTCTTCTTTTGAAGCTGCAGTTGTCGCTGCAACTTCTACATTAGAATTAATGGGTATTCAATATGATTATAATGAAGTATACACTAGAGTTAAAAGTAAGTTTGATTTTGTAATGGATGATTCTGGTG-3′ NSP3 1,305
Quantitative PCR for TV VP1 for the binding assay Forward primer TVVP1-qPCR-F 5′-TTGCAGGAGGGTTTCAAGATG-3′ VP1 (5380–5400) 110
Reverse primer TVVP1-qPCR-R 5′-CACGGTTTCATTGTCCCCCATA-3′ VP1 (5468–5490)