Table 4.

Functional classification and pathway assignment of differentially expressed DEG by GO in expansion stage

Tissue development [GO:0009888]	Gene ID	log2(GH16_E/GH16_I)
Actin-related protein 3	CL1179.Contig2_Total_1	−2.00
Anaphase-promoting complex subunit 10	CL1997.Contig4_Total_1	1.82
Alpha-tubulin	CL28.Contig3_Total_1	−5.08
Tubulin alpha chain	CL3054.Contig1_Total_1	−1.81
Glutamine synthetase nodule isozyme	Unigene128_Total_1	−4.98
Phosphoenolpyruvate carboxylase 2	Unigene13453_Total_1	−1.23
Phosphoenolpyruvate carboxylase 2	Unigene13455_Total_1	1.32
Anaphase-promoting complex subunit 10	Unigene18039_Total_1	− 1.15
Anaphase-promoting complex subunit 6	Unigene2600_Total_1	−1.06
Actin-related protein 2	Unigene4771_Total_1	−1.10
ATPase ASNA1 homolog	Unigene5972_Total_1	−1.32
Homeobox protein knotted-1-like 3	Unigene6778_Total_1	3.48
Root morphogenesi, root system development, root development [GO:0009888,GO:0022622,GO:0048364]
Cytoplasmic tRNA 2-thiolation protein 2	CL1237.Contig1_Total_1	−1.02
Cytoplasmic tRNA 2-thiolation protein 2	CL1237.Contig2_Total_1	−2.28
Mediator of RNA polymerase II transcription subunit 32	CL2787.Contig2_Total_1	2.02
Succinate dehydrogenase assembly factor 2	CL3034.Contig1_Total_1	−1.04
Guanine nucleotide-binding protein	Unigene18752_Total_1	−3.18
Enhanced ethylene response protein 5	Unigene2193_Total_1	−1.75
ATPase ASNA1	Unigene5972_Total_1	−1.32