Table 2.
Primer sequences used in ChIP-qPCR assays
| Primer names | Gene ID | Primer sequence (5′ → 3′) |
|---|---|---|
| Gypsy 1_F | FvH4_1g29494 | CCTGTGGGACACTCACATTC |
| Gypsy 1_R | FvH4_1g29494 | GGAAGGGACAAGTTAGGAGC |
| Gypsy 2_F | FvH4_1g28083 | AGATCATGTCCTTTGAGGAGC |
| Gypsy 2_R | FvH4_1g28083 | CTTCAAGTGAGGACTTCGGT |
| Gypsy 3_F | – | TTAACCCATTTCGACCCTATTT |
| Gypsy 3_R | – | GGCTTCATTATGTTGCCTTTAC |
| Gypsy 4_F | – | AGAGACCAGCATGCAAACCTTA |
| Gypsy 4_R | – | TATGGCGGCACGTGGTAGTG |
| EXP_F | FvH4_7g25860 | CACTCGGTTTCGATCAAAGG |
| EXP_R | FvH4_7g25860 | TGACCTGAAAAGACAGGGCT |
| PYR-G1_F | FvH4_7g31130 | GGAGGTGCGAGTGAGTACATT |
| PYR-G1_R | FvH4_7g31130 | CGCTTTGATGTGCCTGACG |
| PYR-G2_F | FvH4_7g31130 | GGGAATAATAAGAATGGAGGAGGA |
| PYR-G2_R | FvH4_7g31130 | GAGCGTAGAGCTACACTGATG |
| PYR-P1_F | – | GTGCGACATAGATAACCGGA |
| PYR-P1_R | – | ACCTCATGTGTGATTTTACTGAA |
| PYR-P2_F | – | TGGCCTTTGCACATATAACACT |
| PYR-P2_R | – | CAAACTGAAACGAGTTGGAAGT |
| Silent-G1_F | FvH4_4g05900 | TCCTATGTTTACGCCGTTGG |
| Silent-G1_R | FvH4_4g05900 | GCGGGTGTACCTACAAGAATAG |
| Silent-G2_F | FvH4_6g00740 | CTGAAGGATTGAGTGCAGAATTG |
| Silent-G2_R | FvH4_6g00740 | CAGTTTCGGTTCGGGTAAGA |