Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (Escherichia coli) | T7 Express lysY/Iq E. coli | NEB | Cat#: C3013I | |
| Cell line (Homo-sapiens) | 293TT cells | https://dtp.cancer.gov/repositories/ | NCI-293TT | Deposition to ATCC in progress |
| Recombinant DNA reagent | Dark matter capsid expression plasmids | Generated here | Lead contact | |
| Commercial assay or kit | TempliPhi 100 Amplification Kit | Sigma | Cat#: GE25-6400-10 | |
| Chemical compound, drug | Optiprep Density Medium | Sigma | Cat#: D1556-250ML | |
| Chemical compound, drug | Sepharose 4B beads | Sigma | Cat#: 4B200-100ML | |
| Software, algorithm | Cenote-Taker | http://www.cyverse.org/discovery-environment | Cenote-Taker 1.0.0 | github: https://github.com/mtisza1/Cenote-Taker |
| Software, algorithm | EFI-EST | https://efi.igb.illinois.edu/efi-est/ | EFI-EST | |
| Software, algorithm | NCBI BLAST | NCBI | RRID:SCR_004870 | |
| Software, algorithm | SPAdes assembler | http://cab.spbu.ru/software/spades/ | RRID:SCR_000131 | |
| Software, algorithm | A Perfect Circle (APC) | https://github.com/mtisza1/Cenote-Taker/blob/master/apc_ct1.pl | APC | |
| Software, algorithm | EMBOSS suite (getorf) | http://emboss.sourceforge.net/ | RRID:SCR_008493 | |
| Software, algorithm | Circlator | http://sanger-pathogens.github.io/circlator/ | RRID:SCR_016058 | |
| Software, algorithm | HHSuite | https://directory.fsf.org/wiki/Hhsuite | RRID:SCR_016133 | |
| Software, algorithm | tbl2asn | https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ | RRID:SCR_016636 | |
| Software, algorithm | MacVector | http://macvector.com | RRID:SCR_015700 | |
| Software, algorithm | Bandage | https://rrwick.github.io/Bandage/ | Bandage |