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. 2019 Oct 18;1:12. doi: 10.1186/s42523-019-0015-1

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© The Author(s) 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Mid-point rooted maximum-likelihood tree based on 20,194 SNPs in 1810 core genes labelled by hierarchical Bayesian clusters (1–5), health states of hosts, country of isolates, poultry host species, sample origin and year of isolation. Scale bar, ~ 2000 SNPs