Table 3.
Overview of Streptomyces sp. VN1 genome analysis by antiSMASH of 17 secondary metabolites of biosynthetic gene clusters and seven PKS and NRPS gene clusters sharing similarity of more than 40%.
| No | Cluster | Type | From | To | Most similar known biosynthetic gene cluster (percent of similarity) | Reference strain | Accession number |
|---|---|---|---|---|---|---|---|
| 1 | 1 | Oligosaccharide-T1PKS-T3PKS-NRPS | 10491 | 225803 | Lobophorin A (96%) | Streptomyces sp. FXJ7.023 | JX306680 |
| 2 | 2 | Terpene | 237497 | 258555 | 2-Methylisoborneol (100%) | Streptomyces griseus | AP009493 |
| 3 | 5 | Terpene | 539486 | 563714 | Carotenoid (54%) | Streptomyces avermitilis | AB070934 |
| 4 | 9 | Ectoine | 1684875 | 1695273 | Ectoine (100%) | Streptomyces anulatus | AY524544 |
| 5 | 10 | Melanin | 2650272 | 2660898 | Melanin (100%) | Streptomyces coelicolor A3(2) | AL645882 |
| 6 | 11 | Lassopeptide | 2720839 | 2743360 | SSV-2083 (50%) | Streptomyces sviceus | NZ_CM000951 |
| 7 | 12 | Siderophore | 2756614 | 2768407 | Desferrioxamine_B (83%) | Streptomyces coelicolor A3(2) | AL645882 |
| 8 | 15 | Lantipeptide | 4240796 | 4272172 | SBI-06990 alpha/SBI-06989 beta (50%) | Streptomyces bingchenggensis | CP002047 |
| 9 | 17 | Terpene | 5321623 | 5342708 | Albaflavenone B (100%) | Streptomyces coelicolor A3(2) | AL645882 |
| 10 | 18 | T2PKS | 5408372 | 5450926 | Spore_pigment (66%) | Streptomyces avermitilis | AB070937 |
| 11 | 20 | T1PKS-NRPS | 6048796 | 6212376 | Friulimicin (75%) | Actinoplanes friuliensis | AJ488769 |
| 12 | 21 | T1PKS-NRPS | 6260144 | 6309491 | Xiamycin (77%) | Streptomyces sp. SCSIO 02999 | JQ812811 |
| 13 | 26 | T2PKS | 6650019 | 6692435 | Enterocin (95%) | Streptomyces maritimus | AF254925 |
| 14 | 28 | Terpene-NRPS | 7137719 | 7221298 | Hopene (92%) | Streptomyces coelicolor A3(2) | AL645882 |
| 15 | 29 | T1PKS | 7275849 | 7358369 | Divergolide (100%) | Streptomyces sp. HKI0576 | HF563079 |
| 16 | 30 | Bacteriocin | 7687326 | 7697541 | Informatipeptin (42%) | Streptomyces viridochromogenes DSM 40736 | GG657757 |
| 17 | 32 | NRPS | 7898917 | 7949836 | Coelichelin (100%) | Streptomyces coelicolor A3(2) | AL645882 |
The number of BGCs is determined with antiSMASH and ClusterFinder OFF.