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. 2020 Jan 17;18:271–286. doi: 10.1016/j.csbj.2020.01.002

Table 1.

List of servers used in the computational analysis:

Si No: Name of web server Function Reference Submission parameters
1 mCSM Predict protein stability changes due to mutations. [28] Model PDB file, mutation and chain id.
2 SDM Predict protein stability changes due to mutations. [18] Model PDB file, mutation and chain id.
3 mCSM-PPI Predict stability of protein–protein interfaces due to mutations. [28] Model PDB file, mutation and chain id.
4 mCSM-NA2 Predict stability of protein-nucleic acid interactions due to mutations [29] Model PDB file, mutation, chain id and nucleic acid type.
5 mCSM-lig Stability of protein–ligand interactions due to mutations [30] Model PDB file, mutation, chain id, three letter code of the ligand and ligand affinity in wild type structure in nM concentration.
6 FoldX4 Predict protein stability changes due to mutations. [19] Model PDB file, list of mutations and chain ids.
7 MAESTRO Predict protein stability changes due to mutations. [31] Model PDB file, list of mutations and chain ids.
8 CUPSAT Predict protein stability changes due to mutations. [32] Model PDB file, list of mutations and chain ids.
9 Imutant 2.0-Struc Predict protein stability changes due to mutations. [33] Model PDB file, list of mutations and chain ids.
10 Imutant 2.0 -Seq Predict protein stability changes due to mutations using sequence information. [33] RNAP sequence file in fasta format, list of mutations and chain ids.
11 PROVEAN Predict protein stability changes due to mutations using sequence information. [34] RNAP sequence file in fasta format, list of mutations and chain ids.
12 CONSURF To calculate evolutionary conservation score of each residue in the protein. [35] Model PDB file
13 ENCoM Conformational Changes in protein due to mutations. [20] Model PDB file, list of mutations and chain ids.
14 DynaMut Conformational Changes in protein due to mutations. [21] Model PDB file, list of mutations and chain ids.
15 Arpeggio Map interatomic interactions between wildtype and mutant amino acids and the residue environment. [36] Model PDB file and the residue selection in standard format.
16 Intermezzo Map interatomic interactions between wildtype and mutant amino acids and the residue environment. Bernardo Ochoa Montano & Blundell TL unpublished Model PDB file and the residue selection in standard format.
17 ANDANTE Works along with Modeller to generate mutant models from wildtype model files. [26] Model PDB file, mutation and chain id
18 Fragment Hotspot Maps Maps regions on the surface of the protein that has high propensity for small molecule binding. [22] Model PDB file.