Table 2.
Molecular docking analysis data represent the electrostatic interaction between signal molecules, N-(3-Oxooctanoyl)-L homoserine and N-butyryl-homoserine lactone with transcriptional regulators, LasR and RhlR of P. aeruginosa PAO1. Fungal metabolites displayed propitious interaction involving hydrogen bond formation and hydrophobic interaction with LasR and RhlR receptors
S.No | Compound interacting with Receptor protein | Glide Docking Score | Glide Emodel | Hydrogen Bonds with Residue names | Hydrophobic interaction residues name |
---|---|---|---|---|---|
LasR receptor | |||||
1 | N-(3-Oxooctanoyl)-L homoserine | − 6.658 | − 52.888 | TYR56, SER129 | LEU36, TYR47, ILE52, TYR64, VAL76, PHE101, LEU110, PRO74 |
2 | 3-Isobutylhexahydropyrrolo[1,2-a]pyrazine-1,4-dione | − 6.873 | − 34.797 | TRP60, SER129 | LEU36, TYR64, TRP60, TYR56, PRO74, ALA105, TYR93, PHE102, PHE101, TRP88, ALA127, VAL76, LEU110 |
3 | 1,2-benzenedicarboxylic acid, bis(2-methylpropyl) ester | − 5.985 | − 43.424 | TYR56, ARG61, TRP60, SER129, TYR56, | TYR64, ASP73, PHE101, LEU36, ILE52, ALA127, VAL76, LEU110, TRP88, TYR56 |
4 | Sulfurous acid, 2-propyl tridecyl ester | − 7.372 | − 67.983 | TYR56 | LEU40, ASP73, PHE101, ALA105, PHE102, TRP88, TYR93, TYR56, LEU36, ILE52, TYR64, TYR93, TYR56, LEU36, ILE52, TYR64, TYR47, LEU39 |
5 | Ethanethioic acid, S-(2-methylbutyl) ester | − 4.803 | − 31.031 | TYR56, SER129 | LEU36, ASP73, THR75, VAL76, TYR64, TRP60, TRP88, LEU110, TRP88, ALA105, PRO74 |
RhlR receptor | |||||
1 | N-Butyryl homoserine lactone | − 5.081 | − 36.629 | TRP68,ASP81 | ALA44,TYR72,LEU107,LEU116,TYR64 |
2 | 3-Isobutylhexahydropyrrolo[1,2-a]pyrazine-1,4-dione | − 6.257 | − 15.992 | TRP68, TYR72 | ALA83, ALA44, TYR64,TYR72, SER135, ILE84 |
3 | 1,2-benzenedicarboxylic acid, bis(2-methylpropyl) ester | − 4.329 | − 7.548 | – | ALA44, VAL60, TYR64, TYR72, ILE84 |
4 | Sulfurous acid, 2-propyl tridecyl ester | − 5.779 | − 27.202 | – | ALA44, TRP68, LEU107, HIS61, TYR64, LEU69, VAL60, TYR45 |
5 | Ethanethioic acid, S-(2-methylbutyl) ester | − 4.726 | − 28.495 | TRP68 | LEU116, TYR64, LEU69, VAL60, ALA44, TYR64, ASP81, ALA83, TRP96, ALA111 |