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. 2019 Nov 16;60(1):70–77. doi: 10.1007/s12088-019-00840-y

Table 2.

Molecular docking analysis data represent the electrostatic interaction between signal molecules, N-(3-Oxooctanoyl)-L homoserine and N-butyryl-homoserine lactone with transcriptional regulators, LasR and RhlR of P. aeruginosa PAO1. Fungal metabolites displayed propitious interaction involving hydrogen bond formation and hydrophobic interaction with LasR and RhlR receptors

S.No Compound interacting with Receptor protein Glide Docking Score Glide Emodel Hydrogen Bonds with Residue names Hydrophobic interaction residues name
LasR receptor
1 N-(3-Oxooctanoyl)-L homoserine − 6.658 − 52.888 TYR56, SER129 LEU36, TYR47, ILE52, TYR64, VAL76, PHE101, LEU110, PRO74
2 3-Isobutylhexahydropyrrolo[1,2-a]pyrazine-1,4-dione − 6.873 − 34.797 TRP60, SER129 LEU36, TYR64, TRP60, TYR56, PRO74, ALA105, TYR93, PHE102, PHE101, TRP88, ALA127, VAL76, LEU110
3 1,2-benzenedicarboxylic acid, bis(2-methylpropyl) ester − 5.985 − 43.424 TYR56, ARG61, TRP60, SER129, TYR56, TYR64, ASP73, PHE101, LEU36, ILE52, ALA127, VAL76, LEU110, TRP88, TYR56
4 Sulfurous acid, 2-propyl tridecyl ester − 7.372 − 67.983 TYR56 LEU40, ASP73, PHE101, ALA105, PHE102, TRP88, TYR93, TYR56, LEU36, ILE52, TYR64, TYR93, TYR56, LEU36, ILE52, TYR64, TYR47, LEU39
5 Ethanethioic acid, S-(2-methylbutyl) ester − 4.803 − 31.031 TYR56, SER129 LEU36, ASP73, THR75, VAL76, TYR64, TRP60, TRP88, LEU110, TRP88, ALA105, PRO74
RhlR receptor
1 N-Butyryl homoserine lactone − 5.081 − 36.629 TRP68,ASP81 ALA44,TYR72,LEU107,LEU116,TYR64
2 3-Isobutylhexahydropyrrolo[1,2-a]pyrazine-1,4-dione − 6.257 − 15.992 TRP68, TYR72 ALA83, ALA44, TYR64,TYR72, SER135, ILE84
3 1,2-benzenedicarboxylic acid, bis(2-methylpropyl) ester − 4.329 − 7.548 ALA44, VAL60, TYR64, TYR72, ILE84
4 Sulfurous acid, 2-propyl tridecyl ester − 5.779 − 27.202 ALA44, TRP68, LEU107, HIS61, TYR64, LEU69, VAL60, TYR45
5 Ethanethioic acid, S-(2-methylbutyl) ester − 4.726 − 28.495 TRP68 LEU116, TYR64, LEU69, VAL60, ALA44, TYR64, ASP81, ALA83, TRP96, ALA111