Table 1.
Quantitative real-time (RT)-PCR analysis of transcriptional regulation of selected genes.
| RT-qPCR* | Microarray* | Annotation | |
|---|---|---|---|
| Azoarcus | |||
| Os03g0667100 | 2.3 ± 0.9 | 1.6 ± 0.2 | OsNPR3 |
| Os06g0317200 | 249 ± 310 | −79 ± 70 | Similar to glycine-rich cell wall structural protein |
| Os06g0592500 | −7 ± 3 | −9 ± 4 | Similar to Ethylene-responsive transcriptional coactivator |
| Os06g0695300 | −6 ± 2 | −6 ± 4 | prx92; class III peroxidase 92 |
| Os09g0483300 | −4,4 ± 2.9 | −2.2 ± 0.8 | Calcium-binding EF hand family protein |
| Os11g0242800 | −2,2 ± 0.8 | −1,8 ± 0.1 | light-harvesting protein ASCAB9-A, PSII CP26, PSII Lhcb5 |
| Xoo | |||
| Os02g0587800 | 387 ± 489 | 78 ± 80 | Virulence factor, pectin lyase fold family protein |
| Os05g0368000 | 3.1 ± 1.7 | 2.2 ± 0.5 | RH1; NRR repressor homologue 1 |
| Os06g0592500 | 12 ± 5 | 9 ± 5 | Similar to ethylene-responsive transcriptional coactivator |
| Os06g0695300 | 50 ± 34 | 26 ± 12 | prx92; class III peroxidase 92 |
| Os08g0535200 | 3,704 ± 1,908 | 67 ± 31 | Xa13, Os8N3, 8N3, OsSWEET11, SWEET11 |
| Os09g0483300 | 24 ± 19 | 11 ± 9 | EF hand domain containing protein |
*Average fold change and standard deviation from the three biological replicates, compared for quantitative RT-PCR and microarray analysis of rice roots upon colonization with Azoarcus and Xoo.