REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
hamster anti-mouse CD3 (clone 145-2C11) | BD Biosciences | Cat #: 553057; RRID:AB_394590 |
hamster anti-mouse CD28 (clone 37.51) | Tonbo Biosciences | Cat #: 70-0281; RRID:AB_2621492 |
rat anti-mouse IL-4 (clone 11B11) | BD Biosciences | Cat #: 554432; RRID:AB_395388 |
rat anti-mouse IFN-γ (clone XMG1.2) | BD Biosciences | Cat #: 554408; RRID:AB_395373 |
rat anti-mouse CD62L-PE (clone MEL-14), eBioscience | Invitrogen | Cat #: 12-0621-92 |
rat anti-mouse CD44-PE/Cy5 (clone IM7), eBioscience | Invitrogen | Cat #: 15-0441-82; RRID:AB_468749 |
rat anti-mouse CD25-APC/Cy7 (clone PC61) | BioLegend | Cat #: 102025; RRID:AB_830744 |
rat anti-mouse Foxp3-Alexa488 (clone R16-715) | BD Biosciences | Cat #: 563487; RRID:AB_2738236 |
rat anti-mouse IL2-FITC (clone JES6-5H4) | BioLegend | Cat #: 503805; RRID:AB_315299 |
rat anti-mouse IL17A-PE (clone TC11-18H10.1) | BioLegend | Cat #: 506904; RRID:AB_315464 |
rat anti-mouse TNF-α-APC/Cy7 (clone MP6-XT22) | BioLegend | Cat #: 506344; RRID:AB_2565953 |
rat anti-mouse IFN-γAPC (clone XMG1.2) | BioLegend | Cat #: 505810; RRID:AB_315404 |
mouse anti-human CD3 (clone UCHT1) | BD Biosciences | Cat #: 555329; RRID:AB_395736 |
mouse anti-human CD28 (clone CD28.2) | BD Biosciences | Cat #: 555725; RRID:AB_396068 |
rat anti-human CD4-APC (clone A161A1) | BioLegend | Cat #: 357407; RRID:AB_2565659 |
mouse anti-human IL2-FITC (clone MQ1-17H12) | BioLegend | Cat #: 500305; RRID:AB_315092 |
mouse anti-human TNF-α-APC/Cy7 (clone MAb11) | BioLegend | Cat #: 502943; RRID:AB_2562869 |
mouse anti-human CD71-PE (clone CY1G4) | BioLegend | Cat #: 334105; RRID:AB_2271603 |
mouse anti-human CD127-APC/Cy7 (clone A019D5) | BioLegend | Cat #: 351347; RRID:AB_2629571 |
mouse anti-human CD25-Alexa488 (clone BC96) | BioLegend | Cat #: 302615; RRID:AB_493044 |
mouse anti-human Foxp3-BV421 (clone 206D) | BioLegend | Cat #: 320123; RRID:AB_2561338 |
rat anti-mouse CD45-Brilliant Violet 785 (clone 30-F11) | BioLegend | Cat #: 103149; RRID:AB_2564590 |
rat anti-mouse CD4-APC-eFluor780 (clone RM4-5), eBioscience | Invitrogen | Cat #: 47-0042; RRID:AB_1272183 |
rat anti-CD8a-PeCy7 (clone 53-6.7), eBioscience | Invitrogen | Cat #: 25-0081; RRID:AB_469584 |
hamster anti-mouse TCR gamma/delta PerCP-eFluor 710 (clone eBioGL3), eBioscience | Invitrogen | Cat #: 46-5711; RRID:AB_2016638 |
rat anti-IL-17A-FITC (clone eBio17B7), eBioscience | Invitrogen | Cat #: 11-7177; RRID:AB_763581 |
rat anti-mouse GM-CSF-PE (clone MP1-22E9), eBioscience | Invitrogen | Cat #: 12-7331; RRID:AB_466203 |
rat anti-mouse CD25-Brilliant Violet 605 (clone PC61) | BioLegend | Cat #: 102036; RRID:AB_2563059 |
rat anti-mouse IFN-γ- Brilliant Violet 711 (clone XMG1.2) | BioLegend | Cat #: 505835; RRID:AB_11219588 |
rat anti-Ki67-eFluor450 (clone SolA15), eBioscience | Invitrogen | Cat #: 48-5698; RRID:AB_11149124 |
rat anti-Foxp3-APC (clone FJK-16s), eBioscience | Invitrogen | Cat #: 17-5773; RRID:AB_469457 |
monoclonal rabbit anti-histone 3 (clone D1H2) | Cell Signaling Technology | Cat #: 4499; RRID:AB_10544537 |
monoclonal mouse anti-β-actin (clone AC-74) | Sigma Aldrich | Cat #: A5316; RRID:AB_476743 |
monoclonal rabbit anti-PKM1 (clone D30G6) | Cell Signaling Technology | Cat #: 7067; RRID:AB_2715534 |
monoclonal rabbit anti-PKM2 (clone D78A4) | Cell Signaling Technology | Cat #: 4053; RRID:AB_1904096 |
polyclonal rabbit anti-alpha tubulin | Cell Signaling Technology | Cat #: 2144; RRID:AB_2210548 |
polyclonal rabbit anti-c-Myc | Cell Signaling Technology | Cat #: 9402; RRID:AB_2151827 |
polyclonal rabbit anti-phospho-p70 S6 Kinase (Thr389) | Cell Signaling Technology | Cat #: 9205; RRID:AB_330944 |
monoclonal rabbit anti-Hif-1α (clone D2U3T) | Cell Signaling Technology | Cat #: 14179; RRID:AB_2622225 |
polyclonal rabbit anti-phospho-PKM2 (Tyr105) | Cell Signaling Technology | Cat #: 3827; RRID:AB_1950369 |
polyclonal rabbit anti-phospho-PKM2 (Ser37) | Biorbyt | Cat #: orb336828 |
monoclonal rabbit anti-Stat5 (clone D206Y) | Cell Signaling Technology | Cat #: 94205; RRID:AB_2737403 |
monoclonal rabbit anti-phospho-Stat5 (Tyr694) (clone D47E7) | Cell Signaling Technology | Cat #: 4322; RRID:AB_10544692 |
Biological Samples | ||
Blood samples from healthy donors | School of Biochemistry and Immunology, TCD | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
CD62L MicroBeads, mouse | Miltenyi Biotec | Cat #: 130-049-701 |
Mouse IL-12 | Miltenyi Biotec | Cat #: 130-096-708 |
Recombinant Mouse IL-23 (carrier-free) | BioLegend | Cat #: 589002; RRID:AB_10663413 |
Recombinant Human TGF-β1 | ImmunoTools | Cat #: 1134316 |
Recombinant Murine IL-1β | ImmunoTools | Cat #: 1234001 |
Recombinant Murine IL-6 | ImmunoTools | Cat #: 1234006 |
TEPP-46 | National Center for Advancing Translational Sciences (NIH; Bethesda, Maryland, USA) | CAS: 1221186-53-3 |
DASA-58 | Cayman Chemical | Cat #: 13941; CAS: 1203494-49-8 |
DSS | Thermo Scientific | Cat #: 21655; CAS: 68528-80-3 |
WesternBright ECL | Advansta | Cat #: K-12049-D50 |
Propidium Iodide | Invitrogen | Cat #: P1304MP; CAS: 25535-16-4 |
Pacific Blue™ Annexin V | BioLegend | Cat #: 640918 |
PMA | Sigma Aldrich | Cat #: P8139; CAS:16561-29-8 |
Ionomycin | Sigma Aldrich | Cat #: I0634; CAS: 56092-82-1 |
Brefeldin A | Sigma Aldrich | Cat #: B7651; CAS: 20350-15-6 |
Fixation Buffer | BioLegend | Cat #: 420801 |
Intracellular Staining Permeabilization Wash Buffer (10X) | BioLegend | Cat #: 421002 |
Seahorse XF Medium | Agilent | Cat #: 103575 |
Cell-Tak | Corning | Cat #: 354240 |
Olgomycin | Sigma Aldrich | Cat #: 495455; CAS: 1404-19-9 |
2-deoxy-d-glucose | Sigma Aldrich | Cat #: D3179; CAS: 154-17-6 |
FCCP | Sigma Aldrich | Cat #: C2759; CAS: 555-60-2 |
Antimycin A | Sigma Aldrich | Cat #: A8674; CAS: 1397-94-0 |
Rotenone | Sigma Aldrich | Cat #: R8875; CAS: 83-79-4 |
MOG35-55 | GenScript | Cat #: RP10245; CAS: 163913-87-9 |
Complete Freund Adjuvant | Chondrex | Cat #: 7001 |
Pertussis toxin | Kaketsuken | N/A |
(2-Hydroxypropyl)-β-cyclodextrin | Sigma Aldrich | Cat #: H107; CAS: 128446-35-5 |
Protein Transport Inhibitor (BD GolgiStop) | BD Biosciences | Cat #: 554724 |
Purified Rat Anti-Mouse CD16/CD32 (Mouse BD Fc Block™) | BD Biosciences | Cat #: 553141; RRID:AB_394656 |
Critical Commercial Assays | ||
CD4+ T Cell Isolation Kit, mouse | Miltenyi Biotec | Cat #: 130-104-454 |
Naive CD4+ T Cell Isolation Kit, mouse | Miltenyi Biotec | Cat #: 130-104-453 |
Naive CD4+ T Cell Isolation Kit II, human | Miltenyi Biotec | Cat #: 130-094-131 |
Pan T Cell Isolation Kit II, mouse | Miltenyi Biotec | Cat #: 130-095-130 |
Seahorse XFe96 FluxPak | Agilent | Cat #: 102416–100 |
PARIS Kit | Invitrogen | Cat #: AM1921 |
PureLink RNA Mini Kit | Invitrogen | Cat #: 12183025 |
High-Capacity cDNA Reverse Transcription Kit | Applied Biosystems | Cat #: 4368814 |
PowerUp SYBR Green Master Mix | Applied Biosystems | Cat #: A25743 |
CellTrace Violet Cell Proliferation Kit | Invitrogen | Cat #: C34571 |
eBioscience Foxp3 / Transcription Factor Staining Buffer Set | Invitrogen | Cat #: 00-5523-00 |
LIVE/DEAD Fixable Aqua Dead Cell Stain Kit | Invitrogen | Cat #: L34965 |
Pierce™ BCA Protein Assay Kit | Thermo Scientific | Cat #: 23227 |
NEBNext Single Cell/Low Input RNA Library Prep Kit for Illumina | New England BioLabs | Cat #: E6420 |
Deposited Data | ||
RNA sequencing data | This paper | GEO: GSE139378 |
Experimental Models: Organisms/Strains | ||
Mouse: C57BL/6JOlaHsd | Harlan UK | N/A |
Oligonucleotides | ||
mouse Tbp FWD: CCGTGAATCTTGGCTGTAAAC mouse Tbp REV: TGTCCGTGGCTCTCTTATTC |
Eurofins Genomics | N/A |
mouse Pkm1 FWD: TGTCTGGAGAAACAGCCAAG mouse Pkm1 REV: CTCGCACAAGCTCTTCAAAC |
Eurofins Genomics | N/A |
mouse Pkm2 FWD: TGTCTGGAGAAACAGCCAAG mouse Pkm2 REV: CGAATAGCTGCAAGTGGTAGA |
Eurofins Genomics | N/A |
mouse Il2 FWD: AGATGAACTTGGACCTCTGCG mouse Il2 REV: AAAGTCCACCACAGTTGCTG |
Eurofins Genomics | N/A |
mouse Tnfa FWD: GCCTCTTCTCATTCCTGCTT mouse Tnfa REV: TGGGAACTTCTCATCCCTTTG |
Eurofins Genomics | N/A |
mouse Foxp3 FWD: TTTCACCTATGCCACCCTTATC mouse Foxp3 REV: GTAGGCGAACATGCGAGTAA |
Eurofins Genomics | N/A |
mouse Hif1a FWD: GGGTACAAGAAACCACCCAT mouse Hif1a REV: GAGGCTGTGTCGACTGAGAA |
Eurofins Genomics | N/A |
mouse Myc FWD: TTGAAGGCTGGATTTCCTTTGGGC mouse Myc REV: TCGTCGCAGATGAAATAGGGCTGT |
Eurofins Genomics | N/A |
mouse Slc2a1 FWD: GATCACTGCAGTTCGGCTATAA mouse Slc2a1 REV: GTAGCGGTGGTTCCATGTT |
Eurofins Genomics | N/A |
mouse Gapdh FWD: TGGTGAAGGTCGGTGTGAAC mouse Gapdh REV: TGAATTTGCCGTGAGTGGAG |
Eurofins Genomics | N/A |
mouse Ldha FWD: CGTCTCCCTGAAGTCTCTTAAC mouse Ldha REV: TTCAGCTTGATCACCTCGTAG |
Eurofins Genomics | N/A |
mouse Hk FWD: TCGCCTGCTTATTCACGGAG mouse Hk REV: CCATCCGGAGTTGACCTCAC |
Eurofins Genomics | N/A |
mouse Pfkm FWD: GTTTGGAAGCCTCTCCTCCTC mouse Pfkm FWD: AGAGGTCAACACGGCGATG |
Eurofins Genomics | N/A |
mouse Il17a FWD: CAAACATGAGTCCAGGGAGAG mouse Il17a REV: GCTGAGCTTTGAGGGATGAT |
Eurofins Genomics | N/A |
mouse Il17f FWD: TCCCACGTGAATTCCAGAAC mouse Il17f REV: GTTCATGGTGCTGTCTTCCT |
Eurofins Genomics | N/A |
mouse Il21 FWD: CGCCTCCTGATTAGACTTCG mouse Il21 REV: GCCCCTTTACATCTTGTGGA |
Eurofins Genomics | N/A |
mouse Il22 FWD: TCATCGGGGAGAAACTGTTC mouse Il22 REV: TTCCAGGGTGAAGTTGAGCA |
Eurofins Genomics | N/A |
mouse Rora FWD: GAACACCTTGCCCAGAACAT mouse Rora REV: AGCTGCCACATCACCTCTCT |
Eurofins Genomics | N/A |
mouse Runx1 FWD: TACCTGGGATCCATCACCTC mouse Runx1 REV: GACGGCAGAGTAGGGAACTG |
Eurofins Genomics | N/A |
mouse Irf4 FWD: GCAGCTCACTTTGGATGACA mouse Irf4 REV: CCAAACGTCACAGGACATTG |
Eurofins Genomics | N/A |
mouse Rorc FWD: TGCAAGACTCATCGACAAGGC mouse Rorc REV: AGCTTTTCCACATGTTGGCTG |
Eurofins Genomics | N/A |
mouse Ahr FWD: AGGTGCCTGCTGGATAATTC mouse Ahr REV: CCGTCCTTCCCTTTCTTGTT |
Eurofins Genomics | N/A |
mouse Nzkbiz FWD: GCAGGTAGAGCAGGAAGAAA mouse Nzkbiz REV: CCTTGGGCAACAGCAATATG |
Eurofins Genomics | N/A |
mouse Batf FWD: CCAGAAGAGCCGACAGAGAC mouse Batf REV: GAGCTGCGTTCTGTTTCTCC |
Eurofins Genomics | N/A |
mouse Ifng FWD: CTCTTCTTGGATATCTGGAGGAAC mouse Ifng REV: GACTTCAAAGAGTCTGAGGTAGAA |
Eurofins Genomics | N/A |
mouse Tbx21 FWD: CAACAACCCCTTTGCCAAAG mouse Tbx21 REV: TCCCCCAAGCAGTTGACAGT |
Eurofins Genomics | N/A |
mouse Eomes FWD: ACCAATAACAAAGGTGCAAACAAC mouse Eomes REV: TGGTATTTGTGCAGAGACTGCAA |
Eurofins Genomics | N/A |
human RPS13 FWD: CGAAAGCATCTTGAGAGGAAC human RPS13 REV: TCGAGCCAAACGGTGAATC |
Eurofins Genomics | N/A |
human PKM1 FWD: TCACTCCACAGACCTCATGG human PKM1 REV: GAAGATGCCACGGTACAGGT |
Eurofins Genomics | N/A |
human PKM2 FWD: ATCGTCCTCACCAAGTCTGG human PKM2 REV: GAAGATGCCACGGTACAGGT |
Eurofins Genomics | N/A |
human IL2 FWD: CCCAGGGACTTAATCAGCAATA human IL2 REV: TGCTGTCTCATCAGCATATTCA |
Eurofins Genomics | N/A |
Software and Algorithms | ||
Image Lab (Version 5.0) | Bio-Rad | https://www.bio-rad.com/en-uk/product/image-lab-software?ID=KRE6P5E8Z |
FlowJo (version 10.5.3) | FlowJO | https://www.flowjo.com/solutions/flowjo |
Seahorse Wave Controller Software (version 2.4.2) | Agilent | https://www.agilent.com/en/products/cell-analysis/cell-analysis-software/instrument-software/wave-controller-2-4 |
Prism (version 8.2.0) | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
SnakePipes (version 1.2.0) | Bhardwaj et al., 2019 | N/A |
DESeq2 R | Love et al., 2014 | N/A |
Ingenuity Pathway Analysis | Qiagen | https://www.qiagenbioinformatics.com/products/ingenuity-pathway-analysis/ |
Morpheus | Broad Institute, Cambridge, MA, (USA) | https://software.broadinstitute.org/morpheus/ |