Table 5.
Association of marker alleles with Fe and Zn content in milled rice detected both in GLM and MLM analyses in a shortlisted panel population of 102 genotypes
| Trait | Marker | GLM | MLM | ||||||
|---|---|---|---|---|---|---|---|---|---|
| F value | P value | R2 | q value | F value | P value | R2 | q value | ||
| Fe content | RM243 | 6.21777 | 0.01429 | 0.05854 | 0.01958259 | 5.85605 | 0.01733 | 0.05798 | 0.03987069 |
| RM122 | 4.3147 | 0.04035 | 0.04136 | 0.04265571 | 7.11419 | 0.00892 | 0.07044 | 0.027565 | |
| RM234 | 16.81381 | 8.41E-05 | 0.14394 | 0.00062208 | 8.05498 | 0.0055 | 0.07975 | 0.027565 | |
| RM7 | 8.87945 | 0.00362 | 0.08155 | 0.00558083 | 4.05058 | 0.04684 | 0.0401 | 0.04814111 | |
| RM168 | 14.70112 | 2.20E-04 | 0.12817 | 0.00093926 | 4.93231 | 0.02862 | 0.04883 | 0.03987069 | |
| RM80 | 16.39877 | 1.01E-04 | 0.14088 | 0.0006253 | 7.60915 | 0.00691 | 0.07534 | 0.03987069 | |
| RM339 | 11.69699 | 9.08E-04 | 0.10472 | 0.00176731 | 5.24734 | 0.02408 | 0.05195 | 0.03987069 | |
| RM1132 | 4.14297 | 0.04445 | 0.03978 | 0.04568472 | 5.61267 | 0.01975 | 0.05557 | 0.03987069 | |
| OSZIP8 | 11.44893 | 0.00102 | 0.10273 | 0.001887 | 5.2546 | 0.02398 | 0.05203 | 0.03987069 | |
| OSZIP6A | 5.86773 | 0.01722 | 0.05543 | 0.0205529 | 7.37666 | 0.00779 | 0.07304 | 0.027565 | |
| Zn content | RM260 | 5.99267 | 0.01611 | 0.05654 | 0.0205529 | 4.6087 | 0.03423 | 0.04563 | 0.04155935 |
| RM80 | 11.86398 | 8.38E-04 | 0.10606 | 0.00172177 | 5.28924 | 0.02354 | 0.05237 | 0.03987069 | |
| RM300 | 11.98471 | 7.91E-04 | 0.10702 | 0.00172177 | 7.74249 | 0.00645 | 0.07666 | 0.027565 | |
| RM339 | 5.32614 | 0.02307 | 0.05057 | 0.02586636 | 4.1887 | 0.04332 | 0.04147 | 0.04714235 | |
| RM340 | 5.59171 | 0.01998 | 0.05296 | 0.02310188 | 4.78072 | 0.03111 | 0.04733 | 0.03987069 | |
| RM1132 | 9.0313 | 0.00335 | 0.08283 | 0.00538913 | 6.3645 | 0.01322 | 0.06301 | 0.03762615 | |
| GRMM9–1 | 13.00392 | 4.87E-04 | 0.11507 | 0.00137370 | 12.41426 | 6.44E-04 | 0.12291 | 0.008732 | |
| Panicles /m2 | RM248 | 18.23846 | 4.45E-05 | 0.15425 | 0.00041122 | 5.4383 | 0.0217 | 0.05384 | 0.03987069 |
| RM17 | 14.62367 | 2.28E-04 | 0.12758 | 0.00093926 | 11.26493 | 0.00112 | 0.11153 | 0.008732 | |
| RM3392 | 9.9083 | 0.00217 | 0.09015 | 0.00364954 | 4.57817 | 0.03482 | 0.04533 | 0.04155935 | |
| RM440 | 13.87657 | 3.23E-04 | 0.12186 | 0.00119617 | 4.78325 | 0.03107 | 0.04736 | 0.03987069 | |
| RM85 | 12.94277 | 5.01E-04 | 0.1146 | 0.00137370 | 3.98538 | 0.04862 | 0.03946 | 0.04862 | |
| RM421 | 7.28154 | 0.00818 | 0.06787 | 0.0121064 | 11.14884 | 0.00118 | 0.11038 | 0.008732 | |
| RM31 | 4.76448 | 0.03139 | 0.04548 | 0.03415971 | 4.77291 | 0.03125 | 0.04726 | 0.03987069 | |
| RM556 | 18.72712 | 3.58E-05 | 0.15773 | 0.00041122 | 4.90142 | 0.02911 | 0.04853 | 0.03987069 | |
| RM23 | 15.80571 | 1.33E-04 | 0.13648 | 0.00070178 | 4.12242 | 0.04497 | 0.04082 | 0.04753971 | |
| RM340 | 12.95157 | 4.99E-04 | 0.11466 | 0.00137370 | 5.74925 | 0.01835 | 0.05692 | 0.03987069 | |
| OsNRAMP1A | 26.69468 | 1.22E-06 | 0.2107 | 3.206975e-05 | 11.87069 | 8.35E-04 | 0.11753 | 0.008732 | |
| OsFER1 | 25.83769 | 1.73E-06 | 0.20533 | 3.206975e-05 | 9.85209 | 0.00223 | 0.09755 | 0.01375167 | |
| Yield/plot | RM243 | 4.05979 | 0.0466 | 0.03901 | 0.0466 | 4.3019 | 0.04064 | 0.04259 | 0.04556606 |
| RM248 | 5.92531 | 0.0167 | 0.05594 | 0.0205529 | 5.01002 | 0.02742 | 0.0496 | 0.03987069 | |
| RM17 | 11.91911 | 8.16E-04 | 0.1065 | 0.00172177 | 7.11104 | 0.00894 | 0.07041 | 0.027565 | |
| RM517 | 12.86597 | 5.20E-04 | 0.11399 | 0.00137370 | 14.7466 | 2.16E-04 | 0.14601 | 0.027565 | |
| RM421 | 6.89217 | 0.01002 | 0.06448 | 0.01425923 | 5.55647 | 0.02036 | 0.05501 | 0.03987069 | |
| RM34 | 6.06991 | 0.01546 | 0.05723 | 0.02042929 | 5.16896 | 0.02513 | 0.05118 | 0.03987069 | |
| RM339 | 11.30774 | 0.00109 | 0.10159 | 0.00192047 | 4.47416 | 0.0369 | 0.0443 | 0.04266563 | |
| RM1132 | 11.952 | 8.03E-04 | 0.10676 | 0.00172177 | 4.78822 | 0.03098 | 0.04741 | 0.03987069 | |