Table 1.
Summary data for the isolates of Microcotyle spp. used in the phylogenetic analyses
| Parasite species | Host species | Isolate | FAO Fishing Area | GenBank ID | Source | |
|---|---|---|---|---|---|---|
| cox1 | 28S | |||||
| M. algeriensis Ayadi, Gey, Justine & Tazerouti, 2016 | Scorpaena notata Rafinesque | MO-01 | WM | KX926443 | Ayadi et al. [24] | |
| Scorpaena notata | MO-02 | WM | KX926444 | Ayadi et al. [24] | ||
| Scorpaena notata | MO-03 | WM | KX926445 | Ayadi et al. [24] | ||
| M. archosargi MacCallum, 1913 | Archosargus rhomboidalis (L.) | 81 | WCA | MG586867 | Mendoza-Franco et al. [25] | |
| M. arripis Sandars, 1945 | Arripis georgianus (Valenciennes) | SA | GU263830 | Catalano et al. [26] | ||
| M. caudata Goto, 1894 | Sebastes inermis Cuvier | MC06 | NWP | LC472527 | Kamio & Ono (unpublished data) | |
| “Sebastes inermis species complex” | MC12 | NWP | LC472528 | Kamio & Ono (unpublished data) | ||
| “Sebastes inermis species complex” | MC18 | NWP | LC472529 | Kamio & Ono. (unpublished data) | ||
| “Sebastes inermis species complex” | MC20 | NWP | LC472530 | Kamio & Ono (unpublished data) | ||
| “Sebastes inermis species complex” | MC24 | NWP | LC472531 | Kamio & Ono (unpublished data) | ||
| M. erythrini van Beneden & Hesse, 1863 | Pagellus erythrinus (L.) | MePe1 | WM | MN814848 | Present study | |
| Pagellus erythrinus | MePe2 | WM | MN816012 | Present study | ||
| Pagellus erythrinus | MePe3 | WM | MN816013 | Present study | ||
| Pagellus erythrinus | WM | AY009159 | Jovelin & Justine [15] | |||
| Pagellus erythrinus | WM | AM157221 | Badets et al. [12] | |||
| Pagrus pagrus (L.) | MePp1 | WM | MN816014 | MN814849 | Present study | |
| Pagrus pagrus | MePp2 | WM | MN816015 | Present study | ||
| Pagrus pagrus | MePp3 | WM | MN816016 | Present study | ||
| Pagrus pagrus | MePp4 | WM | MN816017 | Present study | ||
| M. isyebi Bouguerche, Gey, Justine & Tazerouti, 2019 | Boops boops (L.) | MiBb1 | WM | MN816018 | MN814850 | Present study |
| Boops boops | MiBb2 | WM | MN816019 | Present study | ||
| Boops boops | MiBb3 | WM | MN816020 | Present study | ||
| Boops boops | MiBb4 | WM | MN816021 | Present study | ||
| Boops boops | MO01 | WM | MK317922 | Bouguerche et al. [3] | ||
| M. sebastis Goto, 1894 | Sebastes sp. | NSP | AF382051 | Olson & Littlewood [16] | ||
| Microcotyle sp. AKV-2016 | Nemipterus japonicas (Bloch) | VII37_12 | EAS | KU926692 | Verma & Agrawal (unpublished data) | |
| Microcotyle sp. DG-2016 | Helicolenus dactylopterus (Delaroche) | MO-04 | WM | KX926446 | Ayadi et al. [24] | |
| Helicolenus dactylopterus | MO-06 | WM | KX926447 | Ayadi et al. [24] | ||
| Sebastes schlegelii Hilgendorf | NWP | DQ412044 | Park et al. [27] | |||
| Microcotyle sp. YK-2019 | Sebastiscus marmoratus (Cuvier) | MK02 | NWP | LC472525 | Kamio & Ono (unpublished data) | |
| Microcotyle sp. YK-2019 | Sebastiscus marmoratus | MK01 | NWP | LC472526 | Kamio & Ono (unpublished data) | |
| Microcotyle sp. 1 SC-2018 | – | NWP | MH700256 | Chou (unpublished data) | ||
| Microcotyle sp. 2 SC-2018 | – | NWP | MH700266 | Chou (unpublished data) | ||
| Microcotylidae sp. M10 | Sebastes sp. | M10 | NWA | EF653385 | Aiken et al. [28] | |
| Microcotylidae sp. M11 | Argyrosomus japonicus | M11 | SA | EF653386 | Aiken et al. [28] | |
| M. visa Bouguerche, Gey, Justine & Tazerouti, 2019 | Pagrus caeruleostictus (Valenciennes) | PacoerMO01 | WM | MK275652 | Bouguerche et al. [2] | |
| Pagrus caeruleostictus | PacoerMO02 | WM | MK275653 | Bouguerche et al. [2] | ||
| Pagrus caeruleostictus | PacoerMO03 | WM | MK275654 | Bouguerche et al. [2] | ||
| M. whittingtoni n. sp. | Dentex dentex (L.) | MwDd1 | WM | MN816010 | MN814847 | Present study |
| Dentex dentex | MwDd2 | WM | MN816011 | Present study | ||
| “Paramicrocotyle” sp. FAS-2014a | Pinguipes chilensis (Valenciennes) | SWP | KJ794215 | Oliva et al. [29] | ||
| Outgroup | ||||||
| Bivagina pagrosomi (Murray, 1931) | Sparus aurata L.b | SWP | Z83003 | Z83002 | Littlewood et al. [10] | |
aGenus synonymized with Microcotyle [2, 30]
bAs Sparus auratus in Littlewood et al. [10]
Note: The newly generated sequences are indicated in bold
Abbreviations: CPS, Central-South-East Pacific; EAS, Eastern Arabian Sea; NS, North Sea; NWA, North-West Atlantic; NWP, North-West Pacific; SA, Southern Australia; SWP, South-West Pacific; WCA Western-Central Atlantic; WM, Western Mediterranean, –, not specified