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. Author manuscript; available in PMC: 2020 Feb 5.
Published in final edited form as: Proteins. 2017 Jul 24;85(10):1831–1844. doi: 10.1002/prot.25336

TABLE 1.

Data collection and refinement statistics

YenR-LBD YenR-LBD-OHHL CepR2
Data collection
Space group C2221 C2221 P21
Cell dimensions
a, b, c (Å) 64.37, 123.40, 106.91 63.88, 122.78, 107.60 120.28, 74.59, 118.03
α, β, γ (°) 90, 90, 90 90, 90, 90 90, 117.3, 90
Protein molecules/ASU 2 2 6
Temperature (K) 100 100 100
Radiation source APS, 19-ID APS, 19-ID APS, 19-ID
Wavelength (Å) 0.9792 0.9792 0.9792
Resolution (Å)a 2.20 (2.23–2.20) 2.00 (2.03–2.00) 2.75 (2.80–2.75)
Unique reflections 21587 (1061) 29198 (1422) 48922 (2403)
Rmergeb 0.098 (0.703) 0.082 (0.616) 0.095 (0.798)
I〉/〈σI 17.1/3.1 23.9/5.3 12.6/1.9
Completeness (%) 97.3 (95.8) 99.9 (100) 99.1 (99.4)
Redundancy 5.5 (4.9) 6.5 (6.6) 3.1 (2.9)
Refinement
Resolution (Å) 2.20 2.00 2.75
Reflections: work/test set 19505/1054 26360/2774 40872/2158
Rcryst/Rfreec 0.175/0.214 0.171/0.203 0.184/0.218
No. of atoms: protein/ligandsd/water 2690/64/75 2718/93/136 7911/61/100
Average B factor (Å2): protein/ligands/water 45.9/77.0/43.1 34.7/49.2 (24.9)e/38.8 51.9/72.4/37.9
Bond lengths (Å) 0.008 0.009 0.004
Bond angles (°) 0.892 0.997 0.661
Ramachandran plot
Most favored 96.9 98.8 97.3
Outliers 0.0 0.0 0.41
PDB code 5L07 5L09 5L10
Crystallization conditions 0.1 M sodium acetate pH 4.5, 2.5 M ammonium sulfate, 16°C 0.1 M sodium acetate pH 4.5, 2.5 M ammonium sulfate, 16°C 0.2 M Sodium formate, 20% w/v Polyethylene glycol 3,350

ASU, Asymmetric Unit.

a

Values in parentheses correspond to the highest-resolution shell.

b

Rmerge = ΣhklΣi|Ii(hkl)- 〈I(hkl)〉|/ΣhklΣi|〈Ii(hkl)〉|, where Ii(hkl) is the intensity for the ith measurement of an equivalent reflection with indices h, k, and l.

c

Rcryst = Σhkl||Fobs| - |Fcalc||/Σhkl |Fobs|, where Fobs and Fcalc are observed and calculated structure factors, respectively. Rfree is calculated analogously for the test reflections, which were randomly selected and excluded from the refinement.

d

Ligands include all atoms excluding protein and water atoms.

e

Average B factor for OHHL.