Table 1.
Previously identified differentially ‘methylated’ loci overlap with DhMRs in this study
| Chr (DhMR) | Start (DhMR) | End (DhMR) | CpGa | Chr (71CpG)* | Position (71CpG)a | Gene |
|---|---|---|---|---|---|---|
| chr12 | 121890001 | 121900000 | 12 | 121890864 | cg11724984 | RNF34, KDM2B |
| chr10 | 73520001 | 73530000 | 10 | 73521631 | cg23968456 | CDH23, C10orf105, C10orf54 |
| chr1 | 43470001 | 43480000 | 1 | 43473840 | cg15821544 | SLC2A1, FLJ32224, U6 |
| chr17 | 74470001 | 74480000 | 17 | 74475294 | cg13076843 | UBE2O, AANAT, RHBDF2, AX747521, CYGB, PRCD |
| chr7 | 4780001 | 4790000 | 7 | 4786943 | cg25594100 | FOXK1, KIAA0415, MIR4656, RADIL |
| chr21 | 47850001 | 47860000 | 21 | 47855916 | cg00621289 | PCNT, DIP2A |
| chr17 | 1630001 | 1640000 | 17 | 1637391 | cg19803550 | PRPF8, TLCD2, MIR22HG, AF070569, MIR22, WDR81, SERPINF2, SERPINF1, SMYD4 |
| chr16 | 89590001 | 89600000 | 16 | 89598950 | cg03169557 | ANKRD11, SPG7, SNORD68, RPL13, CPNE7 |
| chr8 | 41510001 | 41520000 | 8 | 41519308 | cg05066959 | AGPAT6, NKX6-3, MIR486, JA429246, ANK1 |
| chr17 | 74470001 | 74480000 | 17 | 74475270 | cg05810363 | UBE2O, AANAT, RHBDF2, AX747521, CYGB, PRCD |
| chr17 | 80190001 | 80200000 | 17 | 80195180 | cg07012687 | CCDC57, SLC16A3, CSNK1D |
| chr8 | 41510001 | 41520000 | 8 | 41519399 | cg11823178 | AGPAT6, NKX6-3, MIR486, JA429246, ANK1 |
| chr17 | 74470001 | 74480000 | 17 | 74475355 | cg12163800 | UBE2O, AANAT, RHBDF2, AX747521, CYGB, PRCD |
| chr17 | 1370001 | 1380000 | 17 | 1373605 | cg05417607 | CRK, MYO1C, INPP5K, LOC100306951, PITPNA |
| chr19 | 44270001 | 44280000 | 19 | 44278628 | cg22904711 | SMG9, KCNN4, LYPD5, AK131520 |
| chr2 | 45170001 | 45180000 | 2 | 45178 474 | cg18556455 | SIX3 |
| chr10 | 105 420 001 | 105 430 000 | 10 | 105 420 501 | cg19007269 | SH3PXD2A, Y_RNA |
| chr1 | 55 240 001 | 55 250 000 | 1 | 55 247 356 | cg15645660 | HEATR8-TTC4, TTC4, PARS2, TTC22, C1orf177 |
| chr2 | 127 800 001 | 127 810 000 | 2 | 127 800 646 | cg22883290 | BIN1 |
| chr13 | 113 630 001 | 113 640 000 | 13 | 113 635 690 | cg09448088 | BC035340, MCF2L-AS1, MCF2L |
| chr19 | 1 070 001 | 1 080 000 | 19 | 1 071 176 | cg02308560 | CNN2, ABCA7, HMHA1, POLR2E, GPX4, SBNO2 |
| chr7 | 4 780 001 | 4 790 000 | 7 | 4 786 899 | cg07180538 | FOXK1, KIAA0415, MIR4656, RADIL |
| chr13 | 50 700 001 | 50 710 000 | 13 | 50 700 845 | cg20733077 | DLEU2, DLEU1, ST13P4 |
| chr19 | 49 960 001 | 49 970 000 | 19 | 49 962 324 | cg20618448 | CCDC155, PTH2, LOC100507003, SLC17A7, BC128433, PIH1D1, ALDH16A1,FLT3LG,RPL13A,SNORD32A,SNORD33,SNORD34,SNORD35A,RPS11,SNORD35B,MIR150 |
| chr7 | 65 740 001 | 65 750 000 | 7 | 65 746 852 | cg03193328 | - |
| chr13 | 113 630 001 | 113 640 000 | 13 | 113 634 042 | cg07883124 | BC035340, MCF2L-AS1, MCF2L |
| chr8 | 126 450 001 | 126 460 000 | 8 | 126 458 568 | cg10920329 | TRIB1, AK022787 |
| chr15 | 77 320 001 | 77 330 000 | 15 | 77 324 526 | cg11652496 | PSTPIP1, TSPAN3 |
| chr10 | 134 030 001 | 134 040 000 | 10 | 134 038 395 | cg25917732 | JAKMIP3, AL137551, DPYSL4, STK32C |
| chr8 | 41 510 001 | 41 520 000 | 8 | 41 514 039 | cg16140558 | AGPAT6, NKX6-3, MIR486, JA429246, ANK1 |
| chr20 | 39 310 001 | 39 320 000 | 20 | 39 314 091 | cg13579486 | MAFB |
| chr17 | 7 010 001 | 7 020 000 | 17 | 7 017 474 | cg18659586 | CLEC10A, ASGR2 |
| chr21 | 45 620 001 | 45 630 000 | 21 | 45 626 491 | cg15348679 | ICOSLG, DNMT3L |
| chr3 | 72 620 001 | 72 630 000 | 3 | 72 621 000 | cg16459281 | - |
| chr17 | 7 900 001 | 7 910 000 | 17 | 7 906 847 | cg04157161 | GUCY2D, ALOX15B |
| chr2 | 45 170 001 | 45 180 000 | 2 | 45 175 881 | cg22385702 | SIX3 |
| chr5 | 16 880 001 | 16 890 000 | 5 | 16 886 424 | cg06742628 | MYO10 |
a
aDe Jager et al. 2014.