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. Author manuscript; available in PMC: 2020 Feb 5.
Published in final edited form as: Cell Rep. 2020 Jan 21;30(3):881–892.e5. doi: 10.1016/j.celrep.2019.12.077

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and Virus Strains
E. coli BL21 (DE3) cells Invitrogen Cat. # C600003
Chemicals, Peptides, and Recombinant Proteins
Ampicillin Fisher Scientific Cat. # BP1760–5
Isopropyl β-D-Thiogalactoside (IPTG) Sigma-Aldrich Cat. # I6758
Thrombin from bovine plasma Millipore Cat. # T7201
SYPRO-Orange Invitrogen Cat. # S6651
Amylose resin New England Biolabs Cat. # E8021L
Ni-NTA resin QIAGEN Cat. # 30210
Superdex 75 Increase 10/300 GL GE Healthcare Cat. # 29148721
N-succinyl-Leu-Tyr-7-amido-4-methylcoumarin (sLY-AMC) Cayman Chemical Cat. # 10008120
Ac-Leu-Leu-Tyr-7-amino-4-trifluoromethylcoumarin (Ac-LLY-AFC) Fisher Scientific Cat. # MP3AFC11610
Trans-epoxysuccinyl-L-leucylamido-(4-guanidino)-butane (E64) Sigma-Aldrich Cat. # E3132
Human calpastatin B27 domain Calbiochem Cat. # 208902
ProPlex HT-96 Screen Molecular Dimensions Cat. # MD1–42
H-E(EDANS)-KIEIVRKKPIFKKATV-K(DABCYL)-OH Biopeptek Order #. BPT18360101–3
Deposited Data
hCAPN5-PC This work PDB: 6P3Q
rCAPN1-PC complexed with ZLAK-3001 Qian et al., 2008 PDB: 2R9C
rCAPN1-PC complexed with ZLAK-3002 Qian et al., 2008 PDB: 2R9F
rCAPN1-PC complexed with SNJ-1945 Cuerrier et al., 2006 PDB: 2G8J
rCAPN1-PC complexed with leupeptin Moldoveanu et al., 2004a PDB: 1TL9
rCAPN1-PC complexed with E64 Moldoveanu et al., 2004a PDB: 1TLO
rCAPN1-PC complexed with SNJ-1715 Cuerrier et al., 2006 PDB: 2G8E
hCAPN1-PC Davis et al., 2007 PDB: 2ARY
hCAPN1-PC complexed with ZLLYCH2F Li et al., 2006 PDB: 1ZCM
hCAPN9-PC complexed with leupeptin Davis et al., 2007 PDB: 2P0R
hCAPN9-PC Davis et al., 2007 PDB: 1ZIV
rCAPN2-PC Moldoveanu et al., 2004a PDB: 1MDW
rCAPN2 complexed with calpastatin Hanna et al., 2008 PDB: 3BOW
rCAPN2-PC complexed with calpastatin Moldoveanu et al., 2004a PDB: 3DF0
hCAPN3-PC complexed with leupeptin Yeetal., 2018 PDB: 6BKJ
hCAPN3-PC complexed with E64 Yeetal., 2018 PDB: 6BJD
hCAPN3-PC C129S mutant Yeetal., 2018 PDB: 6BDT
hCAPN3-PC C129A mutant Yeetal., 2018 PDB: 6BGP
hCAPN8-PC Davis et al., 2006 PDB: 2NQA
Recombinant DNA
pMAL-C5X-hCAPN5-PC This work N/A
pMAL-C5X-hCAPN5-PC mutants This work N/A
pMAL-C5X-rCAPN1/5-PCDC2-loop This work N/A
pMAL-C5X-rCAPN1/5-PCDC2-loop mutants This work N/A
Software and Algorithms
XDS Kabsch, 2010 http://xds.mpimf-heidelberg.mpg.de/
PHASER McCoy et al., 2007 http://www.ccp4.ac.uk/html/phaser.html
PHENIX Adams et al., 2011 http://www.phenix-online.org/
REFMAC Murshudov et al., 2011 http://www.ccp4.ac.uk/html/refmac5.html
COOT Emsley and Cowtan, 2004 https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/
SasTool 4–2 Beamline, SSRL https://www-ssrl.slac.stanford.edu/smb-saxs/content/documentation/sastool
ATSAS Konarev et al., 2006 https://www.embl-hamburg.de/biosaxs/software.html
ScAtter SIBLYS Beamline, ALS https://bl1231.als.lbl.gov/scatter/
CRYSOL Svergun et al., 1995 https://www.embl-hamburg.de/biosaxs/crysol.html
DMAN Wang et al., 2012 http://www.structuralchemistry.org/pcsb/dman.php
MODELLER Webb and Sali, 2017 https://salilab.org/modeller/
PDB-REDO Gore et al., 2017; Joosten et al., 2009 https://pdb-redo.eu/
PyMOL Schrödinger, LLC https://pymol.org/2/
HMMER 3.1 Finn et al., 2011 http://hmmer.org/
MAFFT v7 Katoh and Standley, 2013 https://mafft.cbrc.jp/alignment/software/
CD-HIT Li and Godzik, 2006 http://weizhongli-lab.org/cd-hit/
MaxAlign 1.1 Gouveia-Oliveira et al., 2007 http://www.cbs.dtu.dk/services/MaxAlign/
FastTree 2 Price et al., 2010 http://www.microbesonline.org/fasttree/
Geneious Tree Builder Geneious, LLC https://www.geneious.com/
ConSurf Armon et al., 2001; Ashkenazy et al., 2016 https://consurf.tau.ac.il/
MEGA7 Kumar et al., 2016 https://www.megasoftware.net/
EsPript Patrice Gouet and Xavier Robert http://espript.ibcp.fr/
GraphPad Prism GraphPad Software, Inc. https://www.graphpad.com/