Table 3. SNPs of sequenced genomes within 9 loci described in Table 1*.
Locus | SNP #rs ID | Chr | Position | Derived allele frequency | SNP over-repre-sentence | P-value | Annotated genes |
---|---|---|---|---|---|---|---|
1 | Not found | 1 | 236,914,576 | ||||
2 | Not found | 3 | 24,277,049 | ||||
3 | rs149915236 rs148419167 rs148368744 rs182084000 rs78230670 rs79428199 rs140812904 rs75151827 rs149123142 rs117166396 rs73172723 rs73172728 | 3 | 160,963,232 160,974,524 161,109,954 161,135,155 161,652,536 161,652,656 161,681,122 161,693,930 161,697,079 161,731,309 161,777,884 161,779,104 | 0.30 NWA | ≥ x2.2 | 0.003 | NMD3, LOC107986150, TOMM22P6 |
4 | Not found | 4 | 28,850,524 | ||||
5,6 | rs1336274 rs61863039 rs72827309 rs10509451 rs61863041 rs61863047 rs61863048 rs17737264 rs61863049 rs61864201 rs11596426 rs72827335 rs75497737 | 10 | 84,028,864 84,029,031 84,029,228 84,032,154 84,034,357 84,038,763 84,039,605 84,042,161.84,042,276 84,070,366 84,071,127 84,074,280 84,074,407 | 0.30 NEE | ≥x2.2 | 0.1 | NRG3 |
7 | rs147713651 rs117041926 rs147476568 rs111977790 rs112259913 rs190723450 | 13 | 35,159,886 35,162,526 35,182,715 35,456,591 35,481,662 35,550,828 | 0.21 NEE | ≥x5.0 | 0.001 | NBEA |
8 | rs141455074 | 18 | 8,441,576 | 0.28 NWA | ≥x3.4 | 0.0001 | PTPRM (3`-end) |
9 | rs67830720 | 18 | 9,493,156 | 0.34 NEE | ≥x2.0 | 0.1 | RALBP1 |
*Column 1 points to the rows from the Table 1 that describe SNPs from the same chromosomal regions. Column 5 shows the highest derived allele frequency of the identified SNPs observed in North West Asia (NWA) populations, located at the East of Ural Mountains, or North East Europe (NEE) populations (at the West of Ural Mountains). Column 6 presents the ratio of overabundance of the SNPs in North Eurasia populations in comparison to other populations under analysis. It shows how many times the frequency of SNPs in NEE or NWA is higher than in all other populations. Column 7 shows P-value–the estimated probability to find by chance the SNP overrepresented in North Eurasia populations with the observed ratio within the current loci (± 0.8 Mb from the location in Table 1). Column 8 presents genes that host the identified SNPs associated with signals of positive selection.