Table 4.
base-pair at 3′ primer termini (template:primer) | pol κ1−526 | extension with dGTP (the correct nucleotide opposite next template C) |
||||
---|---|---|---|---|---|---|
Km (μM) | kcat (s−1) | kcat/Km (mM−1 s−1) | relative extension efficiencya | |||
G:C | wild-type | 5.0 ± 0.9 | 0.28 ± 0.02 | 56 | 1 | |
L21F | 9.0 ± 1.3 | 0.30 ± 0.02 | 33 | 0.59 | ||
I39T | 6.0 ± 1.3 | 0.16 ± 0.01 | 27 | 0.48 | ||
D189G | 8.2 ± 0.7 | 0.40 ± 0.01 | 49 | 0.88 | ||
R219I | 6.0 ± 1.0 | 0.50 ± 0.03 | 83 | 1.5 | ||
E419G | 23 ± 7 | 0.30 ± 0.03 | 13 | 0.23 | ||
S423R | 1.4 ± 0.2 | 0.27 ± 0.01 | 190 | 3.4 | ||
Y432S | 25 ± 4 | 0.080 ± 0.004 | 3.2 | 0.057 | ||
N2-AnthG:C | wild-type | 14 ± 2 | 0.54 ± 0.02 | 39 | 0.70 | |
L21F | 65 ± 18 | 0.41 ± 0.06 | 6.3 | 0.11 | ||
I39T | 97 ± 12 | 0.60 ± 0.03 | 6.2 | 0.11 | ||
D189G | 200 ± 10 | 0.60 ± 0.02 | 3.0 | 0.054 | ||
R219I | 7.3 ± 3.0 | 0.20 ± 0.02 | 27 | 0.48 | ||
E419G | 27 ± 6 | 0.048 ± 0.004 | 1.8 | 0.032 | ||
S423R | 3.7 ± 0.4 | 0.12 ± 0.03 | 32 | 0.57 | ||
Y432S | 24 ± 3 | 0.051 ± 0.003 | 2.1 | 0.038 |
Relative extension efficiency, calculated by dividing kcat/Km of each pol κ1−526 for each dGTP incorporation opposite the next template C from the G (or N2-AnthG):C pair by kcat/Km of wild type pol κ1−526 for dGTP incorporation opposite the next template C from the undamaged G:C pair.