Table 2.
Taxonomy of ASVs colonizing the ileum at different time points.
| Number of ASVs | |||||||
|---|---|---|---|---|---|---|---|
| Taxonomy | Total count | 3 d.p.h | 7 d.p.h | 14 d.p.h | 21 d.p.h | 28 & 42 d.p.h | NDAa |
| D_4__Lachnospiraceae | 54 | 1 | 0 | 0 | 0 | 39 | 14 |
| D_4__Ruminococcaceae | 40 | 0 | 0 | 0 | 0 | 28 | 12 |
| D_4__Enterococcaceae | 23 | 13 | 0 | 0 | 0 | 1 | 9 |
| D_4__Enterobacteriaceae | 16 | 2 | 0 | 0 | 0 | 4 | 10 |
| D_4__Peptostreptococcaceae | 12 | 0 | 2 | 4 | 0 | 2 | 4 |
| D_4__Lactobacillaceae | 10 | 2 | 0 | 2 | 0 | 4 | 2 |
| D_4__Clostridiaceae 1 | 9 | 1 | 2 | 0 | 0 | 2 | 4 |
| D_4__Corynebacteriaceae | 4 | 0 | 0 | 1 | 0 | 0 | 3 |
| D_4__Staphylococcaceae | 4 | 0 | 0 | 2 | 0 | 0 | 2 |
| D_4__Erysipelotrichaceae | 3 | 0 | 0 | 0 | 2 | 1 | 0 |
| D_4__Peptococcaceae | 3 | 0 | 0 | 0 | 0 | 3 | 0 |
| D_4__Christensenellaceae | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| D_4__Aerococcaceae | 2 | 0 | 0 | 0 | 0 | 1 | 1 |
| D_4__Burkholderiaceae | 2 | 0 | 0 | 0 | 0 | 1 | 1 |
| D_4__Bacteroidaceae | 2 | 0 | 0 | 0 | 0 | 2 | 0 |
| D_4__Streptococcaceae | 2 | 1 | 0 | 0 | 0 | 1 | 0 |
| D_4__Bacillaceae | 2 | 1 | 0 | 0 | 0 | 1 | 0 |
| D_4__Campylobacteraceae | 2 | 0 | 0 | 0 | 0 | 1 | 1 |
| D_4__Dermabacteraceae | 2 | 0 | 0 | 0 | 0 | 0 | 2 |
| D_4__Planococcaceae | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| D_4__Pseudomonadaceae | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| D_4__Atopobiaceae | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| D_4__Bifidobacteriaceae | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| D_4__Rhizobiaceae | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| D_4__Coriobacteriaceae | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| D_4__Paenibacillaceae | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
a
ASVs defined as NDA were not assigned a time point at which colonization was significant. Individual taxonomies of significant Gneiss balances are provided in Supplementary Figure 1.