Table 3.
Taxonomy of ASVs identified as differentially abundant between mucus and lumen samples in the ileum.
| Number of ASVs | ||||
|---|---|---|---|---|
| Taxonomy | Total | Lumen | Mucus | NDAa |
| D_4__Lachnospiraceae | 53 | 0 | 18 | 35 |
| D_4__Ruminococcaceae | 40 | 0 | 23 | 17 |
| D_4__Enterobacteriaceae | 14 | 2 | 0 | 12 |
| D_4__Peptostreptococcaceae | 12 | 5 | 0 | 7 |
| D_4__Lactobacillaceae | 9 | 2 | 1 | 6 |
| D_4__Enterococcaceae | 9 | 4 | 0 | 5 |
| D_4__Clostridiaceae 1 | 7 | 0 | 3 | 4 |
| D_4__Corynebacteriaceae | 4 | 1 | 0 | 3 |
| D_4__Staphylococcaceae | 4 | 2 | 0 | 2 |
| D_4__Erysipelotrichaceae | 3 | 0 | 0 | 3 |
| D_4__Peptococcaceae | 3 | 0 | 2 | 1 |
| D_4__Bacteroidaceae | 2 | 0 | 2 | 0 |
| D_4__Burkholderiaceae | 2 | 0 | 1 | 1 |
| D_4__Christensenellaceae | 2 | 0 | 2 | 0 |
| D_4__Campylobacteraceae | 2 | 0 | 1 | 1 |
| D_4__Streptococcaceae | 2 | 0 | 0 | 2 |
| D_4__Dermabacteraceae | 2 | 0 | 0 | 2 |
| D_4__Aerococcaceae | 2 | 0 | 0 | 2 |
| D_4__Paenibacillaceae | 1 | 0 | 0 | 1 |
| D_4__Planococcaceae | 1 | 0 | 0 | 1 |
| D_4__Atopobiaceae | 1 | 0 | 0 | 1 |
| D_4__Bifidobacteriaceae | 1 | 0 | 0 | 1 |
| D_4__Coriobacteriaceae | 1 | 0 | 0 | 1 |
| D_4__Bacillaceae | 1 | 0 | 1 | 0 |
a
ASVs defined as NDA were not differentially abundant between ileal mucus and lumen samples. Individual taxonomies of significant Gneiss balances are provided in Supplementary Figure 2.