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PMFs over the BAK1 αC helix to N-lobe β-sheet center of mass distance and activation-loop RMSD with respect to a crystal structure (PDB: 3TL8 (20), chain A). The notation pϕ is used as shorthand for the unphosphorylated BAK1 kinase domain. The PMFs were calculated from GAMD simulations, reweighted using MBAR. This figure was produced using Matplotlib 1.5 (47). To see this figure in color, go online.
