Antibodies |
|
Anti-6X His tag® antibody [HIS.H8] |
Abcam |
Ab 18184; RRID:AB_423119
|
Rabbit anti-RecA polyclonal antibody |
Abcam |
Ab 63797; RRID:AB_1142554
|
Goat anti-rabbit IgG HRP conjugate secondary antibody |
Santa Cruz |
sc-2357 |
Goat anti-mouse IgG HRP conjugate secondary antibody |
DAKO |
Cat#P044701-2 |
Mouse anti-BrdU monoclonal antibody |
BD Biosciences |
Cat#347580, B44 clone; RRID:AB_400326
|
Mouse anti-ssDNA antibody |
Developmental Studies Hybridoma Bank, University of Iowa |
N/A |
|
Bacterial and Virus Strains |
|
Enteropathogenic E. coli isolate O127:H6 str. E2348/69; StrR
|
Knutton et al., 1987 |
N/A |
BL21(DE3) E. coli expression strain: F-ompT hsdS(rB- mB-) dcm+ Tetrgal λ(DE3) endA [argU proL] |
Agilent (previously stratagene) |
Cat#200131 |
Dh5α (fhuA2 Δ(argF-lacZ) U169 phoA glnV44 Φ80 Δ(lacZ)M15 gyrA96 recA1 relA1 endA1 thi-1 hsdR17) |
Hanahan, 1983 |
N/A |
SM10 (thi thr leu tonA lacy supE recA::RP4-2-Tc::Mu λpir; kanR) |
Simon et al., 1983 |
N/A |
E. coli λpir (λpir ΔdapA ΔrecA; apraRermRzeoR) |
Herrero et al., 1990 |
N/A |
BTH101 (F- cya-99 araD139 galE15 galK16 rpsL1 (Strr) hsdR2 mcrA1 mcrB1) |
Karimova et al., 2000 |
N/A |
See Table S2 for additional strains generated in this study |
|
N/A |
|
Oligonucleotides |
|
See Table S1 for oligonucleotides used for ADP-ribosylation assays |
|
N/A |
See Table S3 for primers used for cloning |
|
N/A |
|
Recombinant DNA |
|
pCONJ4S (R6Kγ origin in a pKNG101 with sacB and sfgfp; ampR)
|
Kaniga et al., 1991 |
N/A |
pBAD33 (Medium copy plasmid with an arabinose-inducible promoter; cmR) |
Guzman et al., 1995 |
N/A |
pET28A (Medium copy plasmid containing the IPTG-inducible promoter; kanR) |
Novagen |
Cat#69864-3 |
pUC19 (High copy plasmid; ampR) |
NEB |
Cat#N3041S |
pMR101 (Low copy plasmid; kanR) |
This paper |
N/A |
pUT18 (Vector encoding T18 fragment of B. pertussis cyaA; ampR) |
Karimova et al., 1998 |
N/A |
pKT25 (Vector encoding T25 fragment of B. pertussis cyaA; cmR) |
Karimova et al., 1998 |
N/A |
pBAD33_darTG49D (pBAD33 carrying EPEC darTG49D; cmR) |
This paper |
N/A |
pBAD33_darTE170A (pBAD33 carrying EPEC darTE170A; cmR) |
This paper |
N/A |
pET28A_darG (pET28A carrying EPEC darG; kanR) |
This paper |
N/A |
pET28A_darGK54A (pET28A carrying EPEC darGK54A; kanR) |
This paper |
N/A |
pET28A_macro (pET28A carrying EPEC macrodomain of darG (amino acids 1-113); kanR) |
This paper |
N/A |
pET28A_macroK54A (pET28A carrying EPEC macrodomain of darGK54A (amino acids 1-113); kanR) |
This paper |
N/A |
pET28A_Cterm (pET28A carrying EPEC C-terminal domain of darG (amino acids 1-16 + 112-330); kanR) |
This paper |
N/A |
pMR101_recA (pMR101 carrying EPEC recA under control of its endogenous promoter; kanR) |
This paper |
N/A |
pMR101_recF (pMR101 carrying EPEC recF under control of its endogenous promoter; kanR) |
This paper |
N/A |
pMR101_recG (pMR101 carrying EPEC recG under control of its endogenous promoter; kanR) |
This paper |
N/A |
pMR101_ruvAB (pMR101 carrying EPEC ruvAB under control of its endogenous promoter; kanR) |
This paper |
N/A |
pMR101_ruvC (pMR101 carrying EPEC ruvC under control of its endogenous promoter; kanR) |
This paper |
N/A |
pUT18_zip (pKT18 carrying leucine zipper from the yeast transcriptional activator GCN4) |
Karimova et al., 1998 |
N/A |
pUT18_darG (pKT18 carrying EPEC darG; ampR) |
This paper |
N/A |
pUT18_macro (pKT18 carrying EPEC macrodomain of darG (amino acids 1-113); ampR) |
This paper |
N/A |
pUT18_Cterm (pKT18 carrying EPEC C-terminal domain of darG (amino acids 1-16 + 112-330); ampR) |
This paper |
N/A |
pKT25_darTG49D (pKT25 carrying EPEC darTG49D; ampR) |
This paper |
N/A |
pKT25_zip (pKT25 carrying leucine zipper derived from the yeast transcriptional activator GCN4) |
Karimova et al., 1998 |
N/A |
|
Software and Algorithms |
|
ImageJ |
Schneider et al., 2012 |
https://imagej.nih.gov/ij/ |
Prism - GraphPad |
GraphPad Software, Inc. Accessed 5 November 2008 |
https://www.graphpad.com/scientific-software/prism/ |
MATLAB |
MATLAB, 2013; MATLAB, 2016 |
https://www.mathworks.com/products/matlab.html |