Table 2. Summary of Illumina sequencing data.

Samples	Raw reads	Clean reads	Clean bases	Total mapped	GC %	Notes
ck_1	63,907,692	62,954,420	9.44 G	56,800,472 (90.22%)	42.58	replicate 1
ck_2	59,612,900	58,987,528	8.85 G	52,618,695 (89.2%)	42.36	replicate 2
ck_3	59,891,922	59,160,746	8.87 G	52,854,685 (89.34%)	42.30	replicate 3
90128_24_1	53,162,668	52,465,884	7.87 G	44,936,121 (85.65%)	41.75	replicate 1
90128_24_2	58,749,064	57,092,568	8.56 G	49,270,027 (86.3%)	41.25	replicate 2
90128_24_3	54,687,216	53,403,434	8.01 G	46,230,121 (86.57%)	41.25	replicate 3
90128_72_1	42,987,040	42,442,160	6.37 G	37,115,818 (87.45%)	42.31	replicate 1
90128_72_2	47,864,298	47,050,222	7.06 G	41,590,631 (88.4%)	42.48	replicate 2
90128_72_3	51,440,666	50,783,440	7.62 G	44,663,116 (87.95%)	42.58	replicate 3
CN152_24_1	51,628,218	50,645,970	7.60 G	44,366,302 (87.6%)	42.02	replicate 1
CN152_24_2	52,733,816	51,609,526	7.74 G	46,095,042 (89.31%)	42.30	replicate 2
CN152_24_3	54,542,236	53,851,118	8.08 G	46,975,999 (87.23%)	42.30	replicate 3
CN152_72_1	50,939,892	50,291,180	7.54 G	44,139,980 (87.77%)	42.39	replicate 1
CN152_72_2	51,514,318	50,912,860	7.64 G	45,624,288 (89.61%)	42.37	replicate 2
CN152_72_3	60,351,818	59,384,556	8.91 G	48,985,802 (82.49%)	42.50	replicate 3
Total	814,013,764	801,035,612	120.16 G	702,267,099 (87.67%)	42.18	-