Table 3. Statistically Significant BMI GWAS SNPs.
rsID | Chrom | Cyto Region | Associated Gene | Minor Allele | MAF | β | (SE) | GWAS p-value | Mutation Classification |
---|---|---|---|---|---|---|---|---|---|
BMI without DM2 | |||||||||
rs1620977 | chr1 | p31.1 | NEGR1 | A | 27.29 | 0.5819 | 0.125 | 3.30x10-6 | intron |
rs871122 | chr5 | p15.32 | ADAMTS16 | T | 16.61 | 0.6837 | 0.1528 | 7.78x10-6 | intron |
rs4839813 | chr6 | q16.1 | FUT9 | T | 9.69 | 0.8755 | 0.1876 | 3.13x10-6 | intron |
rs11774673 | chr8 | p23.1 | NA | C | 48.21 | 0.5083 | 0.1119 | 5.69x10-6 | unknown |
rs2060457 | chr8 | p23.1 | TDH | T | 48.58 | 0.5584 | 0.1119 | 6.24x10-7 | intron |
rs2293859 | chr8 | p23.1 | TDH | G | 48.73 | 0.5506 | 0.1119 | 8.80x10-7 | ncRNA |
rs10733990 | chr10 | p12.1 | NA | A | 30.53 | 0.5857 | 0.1199 | 1.06x10-6 | unknown |
rs10875969 | chr12 | q13.12 | NCKAP5L | A | 42.38 | 0.505 | 0.1133 | 8.41x10-6 | intron |
rs9937053 | chr16 | q12.2 | FTO | A | 40.76 | 0.5193 | 0.1133 | 4.69x10-6 | intron |
rs9930333 | chr16 | q12.2 | FTO | G | 40.78 | 0.5161 | 0.113 | 5.08x10-6 | intron |
rs9940128 | chr16 | q12.2 | FTO | A | 40.75 | 0.5272 | 0.1131 | 3.19x10-6 | intron |
rs1421085 | chr16 | q12.2 | FTO | C | 38.43 | 0.5999 | 0.1147 | 1.75x10-7 | intron |
rs1558902 | chr16 | q12.2 | FTO | A | 38.46 | 0.6007 | 0.1147 | 1.67x10-7 | intron |
rs1121980 | chr16 | q12.2 | FTO | A | 40.85 | 0.5272 | 0.1128 | 3.03x10-6 | intron |
rs17817449 | chr16 | q12.2 | FTO | G | 37.93 | 0.5562 | 0.1143 | 1.17x10-6 | intron |
rs8043757 | chr16 | q12.2 | FTO | T | 37.98 | 0.5612 | 0.1143 | 9.29x10-7 | intron |
rs8050136 | chr16 | q12.2 | FTO | A | 37.94 | 0.5636 | 0.1143 | 8.34x10-7 | intron |
rs3751812 | chr16 | q12.2 | FTO | T | 37.52 | 0.548 | 0.1149 | 1.90x10-6 | intron |
rs9939609 | chr16 | q12.2 | FTO | A | 38.06 | 0.5504 | 0.1143 | 1.50x10-6 | intron |
rs12149832 | chr16 | q12.2 | FTO | A | 39.1 | 0.534 | 0.1142 | 3.01x10-6 | intron |
BMI with DM2 | |||||||||
rs1776012 | chr1 | p31.1 | NEGR1 | G | 47.74 | -0.4848 | 0.1092 | 9.13x10-6 | intron |
rs11774673 | chr8 | p23.1 | NA | C | 48.21 | 0.5149 | 0.1086 | 2.14x10-6 | unknown |
rs1435277 | chr8 | p23.1 | NA | C | 44.39 | -0.4944 | 0.1112 | 8.90x10-6 | near-gene-5 |
rs11250129 | chr8 | p23.1 | TDH | A | 48.12 | 0.5115 | 0.1089 | 2.67x10-6 | intron |
rs2060457 | chr8 | p23.1 | TDH | T | 48.58 | 0.5802 | 0.1085 | 9.30x10-8 | intron |
rs2293859 | chr8 | p23.1 | TDH | G | 48.73 | 0.5722 | 0.1085 | 1.37x10-7 | ncRNA |
rs2246606 | chr8 | p23.1 | TDH | G | 42.95 | -0.539 | 0.1115 | 1.37x10-6 | intron |
rs2736280 | chr8 | p23.1 | TDH | C | 48.22 | -0.5308 | 0.1098 | 1.36x10-6 | intron |
rs2572386 | chr8 | p23.1 | FAM167A | G | 42.27 | -0.5308 | 0.1115 | 1.96x10-6 | intron |
rs2948300 | chr8 | p23.1 | NA | T | 49.03 | 0.5034 | 0.1099 | 4.70x10-6 | unknown |
rs12412241 | chr10 | p14 | NA | A | 29.62 | -0.5474 | 0.1171 | 3.01x10-6 | unknown |
rs11041833 | chr11 | p15.4 | LMO1 | A | 41.01 | -0.4841 | 0.1082 | 7.77x10-6 | intron |
rs9937053 | chr16 | q12.2 | FTO | A | 40.76 | 0.5002 | 0.1105 | 6.04x10-6 | intron |
rs9930333 | chr16 | q12.2 | FTO | G | 40.78 | 0.4989 | 0.1102 | 6.10x10-6 | intron |
rs9940128 | chr16 | q12.2 | FTO | A | 40.75 | 0.5078 | 0.1102 | 4.18x10-6 | intron |
rs1421085 | chr16 | q12.2 | FTO | C | 38.43 | 0.5616 | 0.1117 | 5.04x10-7 | intron |
rs1558902 | chr16 | q12.2 | FTO | A | 38.46 | 0.5625 | 0.1116 | 4.80x10-7 | intron |
rs1121980 | chr16 | q12.2 | FTO | A | 40.85 | 0.5063 | 0.11 | 4.27x10-6 | intron |
rs17817449 | chr16 | q12.2 | FTO | G | 37.93 | 0.5206 | 0.1113 | 2.94x10-6 | intron |
rs8043757 | chr16 | q12.2 | FTO | T | 37.98 | 0.525 | 0.1112 | 2.41x10-6 | intron |
rs8050136 | chr16 | q12.2 | FTO | A | 37.94 | 0.5244 | 0.1112 | 2.47x10-6 | intron |
rs3751812 | chr16 | q12.2 | FTO | T | 37.52 | 0.5119 | 0.1118 | 4.74x10-6 | intron |
rs9939609 | chr16 | q12.2 | FTO | A | 38.06 | 0.513 | 0.1112 | 4.06x10-6 | intron |
rs12149832 | chr16 | q12.2 | FTO | A | 39.1 | 0.5034 | 0.1111 | 5.98x10-6 | intron |
rs11651343 | chr17 | p13.3 | RTN4RL1 | T | 8.17 | 0.9039 | 0.1974 | 4.75x10-6 | intron |
rs750456 | chr19 | q13.33 | CABP5 | C | 26.19 | -0.5486 | 0.1221 | 7.15x10-6 | intron |
rs8105198 | chr19 | q13.33 | CABP5 | G | 17.18 | -0.6466 | 0.1417 | 5.14x10-6 | coding-synon |
This table represents statistically significant associations with BMI in our cohort.