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. 2019 Dec 26;10(2):645–664. doi: 10.1534/g3.119.400910

Table 3. Statistically Significant BMI GWAS SNPs.

rsID Chrom Cyto Region Associated Gene Minor Allele MAF β (SE) GWAS p-value Mutation Classification
BMI without DM2
rs1620977 chr1 p31.1 NEGR1 A 27.29 0.5819 0.125 3.30x10-6 intron
rs871122 chr5 p15.32 ADAMTS16 T 16.61 0.6837 0.1528 7.78x10-6 intron
rs4839813 chr6 q16.1 FUT9 T 9.69 0.8755 0.1876 3.13x10-6 intron
rs11774673 chr8 p23.1 NA C 48.21 0.5083 0.1119 5.69x10-6 unknown
rs2060457 chr8 p23.1 TDH T 48.58 0.5584 0.1119 6.24x10-7 intron
rs2293859 chr8 p23.1 TDH G 48.73 0.5506 0.1119 8.80x10-7 ncRNA
rs10733990 chr10 p12.1 NA A 30.53 0.5857 0.1199 1.06x10-6 unknown
rs10875969 chr12 q13.12 NCKAP5L A 42.38 0.505 0.1133 8.41x10-6 intron
rs9937053 chr16 q12.2 FTO A 40.76 0.5193 0.1133 4.69x10-6 intron
rs9930333 chr16 q12.2 FTO G 40.78 0.5161 0.113 5.08x10-6 intron
rs9940128 chr16 q12.2 FTO A 40.75 0.5272 0.1131 3.19x10-6 intron
rs1421085 chr16 q12.2 FTO C 38.43 0.5999 0.1147 1.75x10-7 intron
rs1558902 chr16 q12.2 FTO A 38.46 0.6007 0.1147 1.67x10-7 intron
rs1121980 chr16 q12.2 FTO A 40.85 0.5272 0.1128 3.03x10-6 intron
rs17817449 chr16 q12.2 FTO G 37.93 0.5562 0.1143 1.17x10-6 intron
rs8043757 chr16 q12.2 FTO T 37.98 0.5612 0.1143 9.29x10-7 intron
rs8050136 chr16 q12.2 FTO A 37.94 0.5636 0.1143 8.34x10-7 intron
rs3751812 chr16 q12.2 FTO T 37.52 0.548 0.1149 1.90x10-6 intron
rs9939609 chr16 q12.2 FTO A 38.06 0.5504 0.1143 1.50x10-6 intron
rs12149832 chr16 q12.2 FTO A 39.1 0.534 0.1142 3.01x10-6 intron
BMI with DM2
rs1776012 chr1 p31.1 NEGR1 G 47.74 -0.4848 0.1092 9.13x10-6 intron
rs11774673 chr8 p23.1 NA C 48.21 0.5149 0.1086 2.14x10-6 unknown
rs1435277 chr8 p23.1 NA C 44.39 -0.4944 0.1112 8.90x10-6 near-gene-5
rs11250129 chr8 p23.1 TDH A 48.12 0.5115 0.1089 2.67x10-6 intron
rs2060457 chr8 p23.1 TDH T 48.58 0.5802 0.1085 9.30x10-8 intron
rs2293859 chr8 p23.1 TDH G 48.73 0.5722 0.1085 1.37x10-7 ncRNA
rs2246606 chr8 p23.1 TDH G 42.95 -0.539 0.1115 1.37x10-6 intron
rs2736280 chr8 p23.1 TDH C 48.22 -0.5308 0.1098 1.36x10-6 intron
rs2572386 chr8 p23.1 FAM167A G 42.27 -0.5308 0.1115 1.96x10-6 intron
rs2948300 chr8 p23.1 NA T 49.03 0.5034 0.1099 4.70x10-6 unknown
rs12412241 chr10 p14 NA A 29.62 -0.5474 0.1171 3.01x10-6 unknown
rs11041833 chr11 p15.4 LMO1 A 41.01 -0.4841 0.1082 7.77x10-6 intron
rs9937053 chr16 q12.2 FTO A 40.76 0.5002 0.1105 6.04x10-6 intron
rs9930333 chr16 q12.2 FTO G 40.78 0.4989 0.1102 6.10x10-6 intron
rs9940128 chr16 q12.2 FTO A 40.75 0.5078 0.1102 4.18x10-6 intron
rs1421085 chr16 q12.2 FTO C 38.43 0.5616 0.1117 5.04x10-7 intron
rs1558902 chr16 q12.2 FTO A 38.46 0.5625 0.1116 4.80x10-7 intron
rs1121980 chr16 q12.2 FTO A 40.85 0.5063 0.11 4.27x10-6 intron
rs17817449 chr16 q12.2 FTO G 37.93 0.5206 0.1113 2.94x10-6 intron
rs8043757 chr16 q12.2 FTO T 37.98 0.525 0.1112 2.41x10-6 intron
rs8050136 chr16 q12.2 FTO A 37.94 0.5244 0.1112 2.47x10-6 intron
rs3751812 chr16 q12.2 FTO T 37.52 0.5119 0.1118 4.74x10-6 intron
rs9939609 chr16 q12.2 FTO A 38.06 0.513 0.1112 4.06x10-6 intron
rs12149832 chr16 q12.2 FTO A 39.1 0.5034 0.1111 5.98x10-6 intron
rs11651343 chr17 p13.3 RTN4RL1 T 8.17 0.9039 0.1974 4.75x10-6 intron
rs750456 chr19 q13.33 CABP5 C 26.19 -0.5486 0.1221 7.15x10-6 intron
rs8105198 chr19 q13.33 CABP5 G 17.18 -0.6466 0.1417 5.14x10-6 coding-synon

This table represents statistically significant associations with BMI in our cohort.

HHS Vulnerability Disclosure