Table 2. Summary of association studies: SNP at the peak of each QTL; corresponding trait and method from which the QTL was identified, and the least squared effect of the SNP for each yield components, yield and days to maturity. Negative values indicate the desirable allele is inherited from founder parents.
SNP | GWAS (Figure 2) | Number of pods | Number of node | Ratio pods ped node | Yield (bu/ac) | Days to Maturity |
---|---|---|---|---|---|---|
Gm02_6396340 | B,D,E,F | −0.26 | −0.41 | −0.03 | −0.47 | −0.16 |
Gm03_2182974 | A,D,E | −0.25 | −0.38 | −0.03 | −0.18 | −0.33 |
Gm03_46533591 | A,B,G,H | −0.32 | −0.12 | −0.34 | 0.07 | 0.02 |
Gm05_914933 | B | −0.20 | −0.17 | −0.10 | 0.15 | 0.02 |
Gm05_3661638 | B,C | 0.13 | 0.25 | −0.05 | −0.23 | 0.30 |
Gm06_47199506 | D | 0.10 | 0.21 | −0.05 | 0.22 | 0.06 |
Gm07_7868756 | G,H | −0.02 | 0.18 | −0.18 | 0.05 | −0.03 |
Gm12_2838455 | I | 0.07 | 0.15 | −0.04 | −0.09 | 0.08 |
Gm13_14346156 | D | 0.19 | 0.26 | 0.05 | 0.62 | 0.07 |
Gm14_743883 | A | 0.23 | 0.16 | 0.18 | 0.18 | 0.13 |
Gm14_917668 | B | 0.23 | 0.19 | 0.15 | 0.11 | 0.22 |
Gm14_2322106 | D | 0.17 | 0.27 | −0.01 | 0.40 | 0.32 |
Gm15_5446785 | H | −0.09 | 0.14 | −0.23 | −0.24 | −0.02 |
Gm18_2357823 | D,E | −0.11 | −0.24 | 0.05 | −0.27 | −0.02 |
Gm18_57370051 | D,E | 0.23 | 0.28 | 0.08 | 0.14 | 0.22 |
Gm19_1496625 | B,E,I | −0.43 | −0.38 | −0.28 | −0.34 | 0.02 |
Gm19_1587494 | B,C,F,H,I | −0.43 | −0.33 | −0.31 | −0.15 | 0.09 |
Gm19_1991181 | E | −0.36 | −0.34 | −0.21 | −0.15 | 0.10 |