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. 2019 Dec 2;4:191. [Version 1] doi: 10.12688/wellcomeopenres.15603.1

Table 9. JSON file tags.

Tag Meaning
genotype values 0/0, 0/1 or 1/1
genotype_likelihood log likelihood of genotype. The closer to zero, the more likely it is.
percent_coverage proportion of k-mers in allele present with k-mer coverage>0