Table 1. Quantitative statistics of Carolina Gold Select rice initial assemblies and the final reconciled assembly.
Assembly | N50 Contiga | N50 Scaffold | Output Sequence | # of contigs | # of scaffolds | Consensus error rate (errors per 10kb) |
---|---|---|---|---|---|---|
MaSuRCA (Illumina+Nanopore) | 565,857 | 565,857 | 385,480,701 | 1,942 | 1,942 | <1 |
Flye (Nanopore only) |
1,492,039 | 1,497,653 | 362,619,590 | 649 | 634 | 142 |
Reconciled Assembly | 1,632,109 | 1,719,775 | 377,688,090 | 1,297 | 1,286 | 7 |
a Scaffold size of the final assembly (377,689,190 bp) used as genome size for N50 computations.