Skip to main content
. 2020 Jan 27;16(1):e1008571. doi: 10.1371/journal.pgen.1008571

Table 1. Quantitative statistics of Carolina Gold Select rice initial assemblies and the final reconciled assembly.

Assembly N50 Contiga N50 Scaffold Output Sequence # of contigs # of scaffolds Consensus error rate
(errors per 10kb)
MaSuRCA (Illumina+Nanopore) 565,857 565,857 385,480,701 1,942 1,942 <1
Flye
(Nanopore only)
1,492,039 1,497,653 362,619,590 649 634 142
Reconciled Assembly 1,632,109 1,719,775 377,688,090 1,297 1,286 7

a Scaffold size of the final assembly (377,689,190 bp) used as genome size for N50 computations.