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. 2020 Feb 6;10:1983. doi: 10.1038/s41598-020-58859-x

Table 1.

Enriched genesets in MM HDNs using GSEA analysis.

MM HDN SIZE ES NES NOM p-val FDR q-val FWER p-val RANK AT MAX LEADING EDGE
HALLMARK_INTERFERON_ALPHA_RESPONSE 96 −0.75 −2.20 0.00 <0.0001 <0.0001 3954 tags = 63%, list = 12%, signal = 71%
HALLMARK_INTERFERON_GAMMA_RESPONSE 199 −0.63 −2.01 0.00 <0.0001 <0.0001 3954 tags = 51%, list = 12%, signal = 58%
HALLMARK_IL6_JAK_STAT3_SIGNALING 87 −0.67 −1.95 0.00 <0.0001 <0.0001 4482 tags = 46%, list = 13%, signal = 53%
HALLMARK_INFLAMMATORY_RESPONSE 199 −0.56 −1.80 0.00 <0.0001 <0.0001 4860 tags = 37%, list = 14%, signal = 43%
HALLMARK_PI3K_AKT_MTOR_SIGNALING 104 −0.58 −1.74 0.00 <0.0001 <0.0001 3946 tags = 34%, list = 12%, signal = 38%
HALLMARK_PROTEIN_SECRETION 96 −0.56 −1.66 0.00 <0.0001 0.01 3723 tags = 42%, list = 11%, signal = 47%
HALLMARK_APICAL_JUNCTION 199 −0.51 −1.63 0.00 <0.0001 0.02 4298 tags = 26%, list = 13%, signal = 29%
HALLMARK_MITOTIC_SPINDLE 197 −0.51 −1.62 0.00 <0.0001 0.02 4356 tags = 31%, list = 13%, signal = 35%
HALLMARK_KRAS_SIGNALING_UP 200 −0.50 −1.61 0.00 0.01 0.04 3185 tags = 22%, list = 9%, signal = 24%

Abbreviations: FWER, family-wise error rate; NOM, nominal.

The top enriched genesets as ranked by NES are shown for Hallmark genesets.