Table 1.
Enriched genesets in MM HDNs using GSEA analysis.
MM HDN | SIZE | ES | NES | NOM p-val | FDR q-val | FWER p-val | RANK AT MAX | LEADING EDGE |
---|---|---|---|---|---|---|---|---|
HALLMARK_INTERFERON_ALPHA_RESPONSE | 96 | −0.75 | −2.20 | 0.00 | <0.0001 | <0.0001 | 3954 | tags = 63%, list = 12%, signal = 71% |
HALLMARK_INTERFERON_GAMMA_RESPONSE | 199 | −0.63 | −2.01 | 0.00 | <0.0001 | <0.0001 | 3954 | tags = 51%, list = 12%, signal = 58% |
HALLMARK_IL6_JAK_STAT3_SIGNALING | 87 | −0.67 | −1.95 | 0.00 | <0.0001 | <0.0001 | 4482 | tags = 46%, list = 13%, signal = 53% |
HALLMARK_INFLAMMATORY_RESPONSE | 199 | −0.56 | −1.80 | 0.00 | <0.0001 | <0.0001 | 4860 | tags = 37%, list = 14%, signal = 43% |
HALLMARK_PI3K_AKT_MTOR_SIGNALING | 104 | −0.58 | −1.74 | 0.00 | <0.0001 | <0.0001 | 3946 | tags = 34%, list = 12%, signal = 38% |
HALLMARK_PROTEIN_SECRETION | 96 | −0.56 | −1.66 | 0.00 | <0.0001 | 0.01 | 3723 | tags = 42%, list = 11%, signal = 47% |
HALLMARK_APICAL_JUNCTION | 199 | −0.51 | −1.63 | 0.00 | <0.0001 | 0.02 | 4298 | tags = 26%, list = 13%, signal = 29% |
HALLMARK_MITOTIC_SPINDLE | 197 | −0.51 | −1.62 | 0.00 | <0.0001 | 0.02 | 4356 | tags = 31%, list = 13%, signal = 35% |
HALLMARK_KRAS_SIGNALING_UP | 200 | −0.50 | −1.61 | 0.00 | 0.01 | 0.04 | 3185 | tags = 22%, list = 9%, signal = 24% |
Abbreviations: FWER, family-wise error rate; NOM, nominal.
The top enriched genesets as ranked by NES are shown for Hallmark genesets.