Table 5.
The experimental results of V. cholerae.
| Contigs num | Largest contig | Size | Genome fraction | N50 | NGA50 | MA | |
|---|---|---|---|---|---|---|---|
| Velvet | 156 | 246,346 | 3,944,260 | 97.563 | 92,036 | 63,574 | 14 |
| ABySS | 196 | 178,118 | 3,904,784 | 96.699 | 61,965 | 60,272 | 2 |
| SOAPdenovo | 186 | 246,179 | 3,924,635 | 96.94 | 71,357 | 65,464 | 16 |
| (Velvet+ABySS) | |||||||
| GAA | 271 | 170,890 | 3,958,224 | 97.207 | 73,177 | 56,472 | 14 |
| MIX | 147 | 310,702 | 4,038,894 | 96.915 | 124,754 | 91,942 | 19 |
| Metassembler | 150 | 246,346 | 3,935,482 | 97.48 | 92,036 | 63,574 | 13 |
| MAC | 232 | 312,914 | 7,221,147 | 97.322 | 174,216 | 163,176 | 21 |
| (Velvet+ABySS+SOAP) | |||||||
| GAA | 160 | 243,299 | 3,981,614 | 97.713 | 110,446 | 110,446 | 16 |
| MIX | 118 | 310,703 | 4,338,139 | 97.496 | 112,745 | 86,841 | 32 |
| Metassembler | 145 | 246,346 | 3,914,378 | 96.972 | 93,191 | 63,574 | 13 |
| MAC | 87 | 358,265 | 3,997,554 | 97.709 | 167,523 | 110,538 | 13 |
The bolded data indicates the highest value of N50 or NGA50 within each comparison.