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. 2020 Feb 7;10:2077. doi: 10.1038/s41598-020-59155-4

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Dot plots of alignments between nuclear and mitochondrial DNA representing partial duplications (upper left, ARS_22.1), deletions (upper right, ARS_5.1) and insertions (bottom, ARS_2.2 and ARS_28.7). Examples are based on results obtained from NUMTs discovered with the ARS_UCD1.2genome assembly. Mitochondrial DNA sequence is plotted on X axis and NUMT regions are plotted on Y axis. The positions indicated in the axes of the dot plots start at 1 and go to the complete length of the sequence. Therefore, dot plot representations are not in the same scale for the Y axis and the positions of the shifted representation of the mitochondrial DNA is not adjusted for differing linearization cut-points.