Table 1.
Results obtained using LAST for alignment with both genome assemblies and three different mitogenome sequence linearization configurations.
| Assembly | Mitogenome linearization configuration |
Alignmentsa | |||||
|---|---|---|---|---|---|---|---|
| Number | Length (kbp) |
Mitochondrial (kbp) |
Nuclear (kbp) |
Gaps (kbp) |
Identity (%) |
||
| UMD3.1.1 | Standard | 439 | 244.9 | 243.2 | 239.6 | 2.1 | 78.2% |
| Duplicated | 431 | 246.7 | 244.6 | 241.3 | 2.1 | 78.1% | |
| Shifted | 441 | 246.2 | 244.5 | 240.8 | 2.1 | 78.2% | |
| ARS-UCD1.2 | Standard | 426 | 241.5 | 239.8 | 236.3 | 2.0 | 77.9% |
| Duplicated | 419 | 243.1 | 241.4 | 237.9 | 2.1 | 77.9% | |
| Shifted | 428 | 242.8 | 241.1 | 237.6 | 2.1 | 77.9% | |
aInformation about the number of alignments, total alignment length, total length of mitochondrial genome aligned, total length of nuclear genome aligned, alignment gap and average identity between mitochondrial and nuclear sequences. An e-value threshold of 10−4 was applied to select data to be included in the calculations. For the duplicated linearization, duplicated alignments were excluded for calculations.