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. 2020 Feb 6;21:48. doi: 10.1186/s12859-020-3384-2

Table 3.

Statistics for Fig. 7 exhibiting the precision and recall of non-nested RBHs benchmarked by both BLAST RBHs and Ensembl CBGs. Numbers of RBHs (or CBGs) shared by the corresponding sets are indicated in parentheses

Genome Pairs Human-Chimpanzee Human-Mouse
Total number of non-nested RBHs 27,557 19,860

Precision 1: Non-nested RBHs validated by either BLAST

RBHs or Ensembl CBGs

93.8% (25840) 81.1% (16100)

Precision 2: Non-nested RBHs validated by both BLAST

RBHs and Ensembl CBGs

73.8% (20340) 54.5% (10828)
Recall 1: Ensembl CBGs recovered by non-nested RBHs 94.2% (22441) 81.5% (14998)
Recall 2: BLAST RBHs recovered by non-nested RBHs 92.2% (23739) 82.0% (11930)