Table 3.

Gene content of LGI3 from nucleotide position 1,653,803 to 1,685,260 of CC101 strain A37–02-LmUB3PA. Loci are reported with Prokka annotation and homologous “locus tag” from L. monocytogenes reference strains ATCC 51775 for the genes enriched in food the plant (yes) and from L. monocytogenes 6179 for the non-enriched ones (no)

Roary gene name	Prokka annotation	Reference strains locus tag	Enriched in food plant
group_1188	Hypothetical protein	CXL08_07550	yes
ydjM	Inner membrane protein YdjM	CXL08_07545	yes
group_1190	Hypothetical protein	CXL08_07540	yes
group_1191	Cna protein B-type domain protein	CXL08_07535	yes
group_1192	DUF961 domain-containing protein	CXL08_07530	yes
group_1193	DUF961 domain-containing protein	CXL08_07525	yes
ftsK	DNA translocase FtsK	CXL08_07520	yes
group_1195	Gram-positive cell wall anchor protein	CXL08_07515	yes
group_1196	Replication initiation factor	CXL08_07510	yes
group_1197	Hypothetical protein	CXL08_07505	yes
group_1198	Hypothetical protein	CXL08_07500	yes
group_1199	Hypothetical protein	CXL08_07500	yes
group_1200	Hypothetical protein	CXL08_07495	yes
ardA	Antirestriction protein ArdA	CXL08_07495	yes
group_1202	Conjugative transposon protein TcpC	CXL08_07480	yes
group_723	Hypothetical protein	CXL08_07475	yes
group_1203	TcpE family protein	CXL08_07475	yes
group_1204	Putative conjugal transfer protein	CXL08_07470	yes
infB_1	Translation initiation factor IF-2	CXL08_07465	yes
mepM	Murein DD-endopeptidase MepM	CXL08_07460	yes
group_1207	Hypothetical protein	CXL08_07455	yes
group_1208	Tn3 transposase DDE domain protein	LM6179_p0036	no
hin	DNA-invertase hin	LM6179_p0035	no
cadC	Cd-resistance transcriptional regulatory protein CadC	LM6179_p0034	no
cadA1	Putative Cd-transporting ATPase	LM6179_p0033	no
group_1212	Hypothetical protein	CXL08_07450	yes
group_1213	Helix-turn-helix domain DNA-binding protein	CXL08_07445	yes
xerC_1	Site-specific tyrosine recombinase XerC	CXL08_07440	yes
group_1215	Helix-turn-helix domain DNA-binding protein	CXL08_07435	yes