KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Bacterial and Virus Strains | ||
| E. coli BL21-Gold (DE3) | Agilent | Cat#230132 |
| E. coli Tuner™(DE3) | Novagen | Cat#70623-3 |
| Chemicals, Peptides, and Recombinant Proteins | ||
| Protocatechuic acid (PCA) | Pacific Biosciences | Cat#100-215-400 |
| Protocatechuate-3,4-dioxygenase (PCD) | Pacific Biosciences | Cat#001-028-310 |
| TSY | Pacific Biosciences | Cat#100-214-900 |
| Cy5 Maleimide Mono-Reactive Dye 5-Pack | GE Healthcare | Cat#PA25031 |
| Cy5.5 Sulfo-Cyanine5 maleimide | Lumiprobe | Cat#13380 |
| Cy3 Maleimide Mono-Reactive Dye 5-Pack | GE Healthcare | Cat#PA23031 |
| E. coli RNA polymerase holoenzyme | NEB | Cat#M0551S |
| Biolipidure-203 | NOF America Corporation | Cat#Biolipidure-203 |
| Biolipidure-206 | NOF America Corporation | Cat#Biolipidure-206 |
| Purified ribosomal proteins of 16S rRNA 3’domain | This paper | N/A |
| Oligonucleotides | ||
| Primers, geneBlocks-based DNA transcription templates, labeled DNA oligonucleotides | See Data S1 | N/A |
| ACU RNA trinucleotide | Dharmacon | N/A |
| Recombinant DNA | ||
| pRSF-1b | Novagen | Cat#71330-3 |
| pRSF-1b-S2 | This paper | Addgene Plasmid #128590 |
| pRSF-1b-S3 | This paper | Addgene Plasmid #128591 |
| pRSF-1b-S7-S83C/delta157-178 | This paper | Addgene Plasmid #128592 |
| pRSF-1b-S10 | This paper | Addgene Plasmid #128594 |
| pRSF-1b-S13-C85S/P112C | This paper | Addgene Plasmid #128595 |
| pRSF-1b-S14 | This paper | Addgene Plasmid #128596 |
| pRSF-1b-S19-T48C | This paper | Addgene Plasmid #128597 |
| pET-S9 | This paper | Addgene Plasmid #132948 |
| pRSF-1b-S3-M129C | This paper | Addgene Plasmid #132949 |
| pRSF-1b-S15-T79C | This paper | Addgene Plasmid #133048 |
| Software and Algorithms | ||
| MATLAB R2015a | Matworks Inc | http://matlab.com |