Table 1.
Comparison of the transposable element (TE) annotation based on the v3.6.1 and v4.0 assemblies.
| TE order | Acronym | v3.6.1 | v4.0 | ||
|---|---|---|---|---|---|
| Copies | Genome fraction (%) | Copies | Genome fraction (%) | ||
| LTR | RLX | 74,161 | 23.44 | 136,761 | 23.81 |
| LINE | RIX | 11,913 | 2.64 | 15,067 | 1.80 |
| SINE | RSX | 391 | 0.04 | 746 | 0.04 |
| DIRS | RYX | 4,212 | 1.65 | 17,890 | 4.39 |
| TIR | DTX | 21,383 | 7.11 | 92,819 | 14.97 |
| Helitron | DHX | 1,699 | 0.3 | 5,637 | 0.45 |
| Others | 912 | 0.48 | 823 | 0.07 | |
| TOTAL | 35.66 | 45.53 | |||
The TE orders are referred to as follows: LTR-retrotransposons (LTR), Long Interspersed nuclear elements (LINE), short interspersed nuclear elements (SINE), DIRS retrotransposons (DIRS), TIR-TEs (TIR), and Helitrons.