Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Gene (M. musculus) | Hoxa5 | MGI:96177 | ||
| Gene (M. musculus) | Hoxc5 | MGI:96196 | ||
| Gene (M. musculus) | Alcam | MGI:1313266 | ||
| Gene (M. musculus) | Edil3 | MGI:1329025 | ||
| Gene (M. musculus) | Ptprt | MGI:1321152 | ||
| Gene (M. musculus) | Lsamp | MGI:1261760 | ||
| Gene (M. musculus) | Negr1 | MGI:2444846 | ||
| Gene (M. musculus) | Cdh2 | MGI:88355 | ||
| Gene (M. musculus) | Cdh6 | MGI:107435 | ||
| Gene (M. musculus) | Cdh9 | MGI:107433 | ||
| Gene (M. musculus) | Cdh10 | MGI:107436 | ||
| Gene (M. musculus) | Cdh11 | MGI:99217 | ||
| Gene (M. musculus) | Cdh22 | MGI:1341843 | ||
| Genetic reagent (M. musculus) | Hoxa5 flox | PMID: 17417799 | MGI:3723622 | |
| Genetic reagent (M. musculus) | Hoxc5-/- | PMID: 17626057 | MGI:3526151 | |
| Genetic reagent (M. musculus) | Olig2::Cre | PMID: 18046410 | MGI:3774124 | |
| Genetic reagent (M. musculus) | Hb9::GFP | PMID: 12176325 | MGI:3056906; RRID:IMSR_JAX:005029 | |
| Genetic reagent (M. musculus) | Bax-/- | PMID: 7569956 | MGI:1857429; RRID:IMSR_JAX:002994 |
|
| Genetic reagent (M. musculus) | β-catenin flox | PMID: 11262227 | MGI:2148567; RRID:IMSR_JAX:004152 | |
| Genetic reagent (M. musculus) | γ-catenin flox | PMID: 22036570 | MGI:5305426 | |
| Genetic reagent (M. musculus) | γ-catenin-/- | PMID: 8858175 | MGI:1861958; RRID:IMSR_JAX:003334 | |
| Antibody | anti-scip (goat polyclonal) | Santa Cruz Biotechnology | RRID:AB_2268536 | (1:5000) |
| Antibody | anti-islet1/2 (mouse monoclonal) | DSHB; PMID: 7528105 |
RRID:AB_2314683 | (1:1000) |
| Antibody | anti-neurofilament (rabbit polyclonal) | Synaptic Systems | RRID:AB_887743 | (1:1000) |
| Antibody | anti-synaptophysin (rabbit monoclonal) | Thermo Fisher | RRID:AB_10983675 | (1:250) |
| Antibody | anti-GFP (rabbit polyclonal) | Invitrogen | RRID:AB_221570 | (1:1000) |
| Antibody | anti-ChAT (goat polyclonal) | Millipore | RRID:AB_2079751 | (1:200) |
| Antibody | anti-GAD67 (mouse monoclonal) | Millipore | RRID:AB_2278725 | (1:500) |
| Antibody | anti-gephyrin (mouse monoclonal) | Synaptic Systems | RRID:AB_2232546 | (1:3000) |
| Commercial assay or kit | TSA Amplification Kit | Perkin Elmer | Cat. No. NEL753001KT | |
| Commercial assay or kit | Arcturus Picopure RNA Isolation Kit | Applied Biosystems | Cat. No. KIT0204 | |
| Commercial assay or kit | Stranded RNA-seq Kit with Riboerase | Kapa Biosystems | Cat. No. KK8483 | |
| Chemical compound, drug | Picrotoxin | Tocris Bioscience | Cat. No. 1128 | 1.25 mM |
| Chemical compound, drug | Strychnine hydrochloride | Sigma | Cat. No. S8753 | 1.25 mM |
| Chemical compound, drug | α-bungarotoxin, Alexa Fluor 555 conjugate | Invitrogen | RRID:AB_2617152 | (1:1000) |
| Chemical compound, drug | diI | Invitrogen | Cat. No. D3911 | |
| Software, algorithm | FASTQC | http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ | RRID:SCR_014583 | |
| Software, algorithm | Trim Galore | http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ | RRID:SCR_011847 | |
| Software, algorithm | Tophat v2.1.0 | PMID: 23618408 | RRID:SCR_013035 | |
| Software, algorithm | htseq-count | PMID: 25260700 | RRID:SCR_011867 | |
| Software, algorithm | R v3.6.1 | http://www.r-project.org/ | RRID:SCR_001905 | |
| Software, algorithm | pClamp 10 | Molecular Devices | RRID:SCR_011323 | |
| Software, algorithm | Spike2 | Cambridge Electronic Design | RRID:SCR_000903 |