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. Author manuscript; available in PMC: 2020 Feb 8.
Published in final edited form as: J Chem Inf Model. 2019 Aug 27;59(9):3794–3802. doi: 10.1021/acs.jcim.9b00362

Figure 1:

Figure 1:

Alchemical transformation between benzene to phenol as an illustrative example for the current hybrid single-dual topology protocol. Panel (a) presents a strict one-to-one correspondence between the two molecules aided with explicit dummy atom; Panel (b) presents a flexible hybrid single-dual topology implementation on the top of a MCS region.