Table A.1.
Sample description
| Element name | Controlled terminology | Description |
|---|---|---|
| localOrgId | Organisation reporting the data | |
| progLegalRef | Reference to the legislation for the programme defined by programme code. Reference to the legislation on what to sample, how to evaluate the sample, etc. | |
| sampStrategy (mandatory) |
ST10A = Objective sampling ST20A = Selective sampling ST30A = Suspect sampling ST40A = Convenient sampling ST50A = Census ST90A = Other STXXA = Not specified |
Typology of sampling strategy performed in the programme or project identified by programme code |
| progType |
K028A = Survey ‐ national survey K029A = Unspecified K030A = Surveillance active K031A = Surveillance passive K023A = Monitoring –active K024A = Monitoring – passive K021A = Control and eradication programmes K032A = Outbreak investigation |
Indicate the type of programme for which the samples have been collected (National, EU programme, Total diet study, Control and eradication programme) |
| sampMethod |
N001A = Individual/single N002A = Pooled/batch N003A = Animal N004A = Flock N005A = Holding N006A = Herd N007A = Slaughter batch N008A = Unknown N009A = According to Dir. 2002/63/EC N010A = According to 97/747/EC |
Reference to the method for sampling (e.g. EU legislation) |
| sampPoint (mandatory) |
E101A = Farm E180A = Hunting E311A = Slaughterhouse E012A = Zoo E980A = Unknown E310A = Meat processing plant E350A = Animal feeds manufacturer E191A = Natural habitat |
Specify the type of location the sample was obtained from |
| progInfo | Additional info about programme | |
| sampHoldingId | Holding ID for multiple samples from domestic pigs from the same farm | |
| animalID | Unique identifier for the animal | |
| sampId (mandatory) | Unique identifier for the sample, this must be maintained when reporting all laboratory results linked to the sample | |
| sampCountry (mandatory) |
EE LV LT PL |
Country where the sample was taken for laboratory testing (ISO 3166‐1‐alpha‐2) |
| sampArea (mandatory) | NUTS 3 level | Area where the sample was collected (Nomenclature of territorial units for statistics – NUTS) |
| sampLAU1 | From EFSA Catalogue | Area at the first local administrative level where the sample was collected |
| sampLAU2 | From EFSA Catalogue | Area at the second local administrative level where the sample was collected at the lowest administrative unit available |
| longitude | Longitude of the representative sampling point in WGS84 decimal format | |
| latitude | Latitude of the representative sampling point in WGS84 decimal format | |
| sampY (mandatory) | Year of sampling | |
| sampM (mandatory) | Month of sampling | |
| sampD | Day of sampling | |
| sampInfo | Additional information on the sampling taken depending on specific requirements of the different data collection domains (e.g. day of arrival in the lab) | |
| sampMatType (mandatory) |
S000A = Animal sample S019A = Food sample S026A = Feed sample S027A = Environmental sample S030A = Unknown |
Type of sample taken |
| sampMatCode |
A056Y = Wild boar A16AB = Wild boar‐domestic pig hybrids A0C9X = Breeding pigs A0C9Y = Fattening pigs A0C9Z = Mixed pig herds A0CAA = Breeding piglets A0CAE = Fattening piglets |
Type of animal tested |
| sampMatText |
Hunted Clinical suspicion Found dead Alive Premovement testing Depopulation |
Additional info about how the sample was obtained ‘Clinical susp’ includes ‘euthanasia’ and ‘sick’ ‘Found dead’ includes ‘traffic accident’ Depopulation ‐ for wild boar, hunted in the framework of control measures |
| Decomposition (mandatory) |
1 = Fresh 2 = Decomposed 3 = Bones |
Degree of decomposition of carcasses |
| age (mandatory) |
Adult Young Unknown |
ADULT = Greater 1 year YOUNG = Up to 1 year Unknown |
| sex (mandatory) |
M = Male F = Female U = Unknown |
|
| sampMatInfo | Additional specific information and comments on the matrix sampled | |
| sampAnId | Identification code of sample analysed | |
| analysisY | Year when the analysis was completed | |
| analysisM | Month when the analysis was completed | |
| analysisD | Day when the analysis was completed | |
| anMatCode |
A01XD = Animal liver A01YG = Animal kidney A01ZK = Animal other organs A020P = Animal other slaughtering products A0F1T = Animal blood A021E = Animal bone marrow A0CEY = Blood serum A0F5E = Gelatine A0CJN = Lymph nodes A04MQ = Mixed organs A01RG = Pig muscle A16AA = Salivary glands A06AK = Skin A069Q = Spleen A0EYE = Whole animal A04CN = Wild boar carcase |
Description of matrix analysed. It allows specifying the characteristics of the matrix analysed |
| anMatText | Description of the matrix analysed characteristics using free text | |
| labId | Identification code of the laboratory (National laboratory code if available). This code should be nationally unique and consistent through all data domain transmissions | |
| labCountry (mandatory) | COUNTRY | Country where the laboratory is located (ISO 3166‐1‐alpha‐2) |
| paramCode (mandatory) | RF‐00002657‐MCG = African swine fever virus | Encoding of the parameter/analyte according to the PARAM catalogue |
| paramText | Description of the parameter/analyte using free text | |
| anMethCode |
F086A = Polymerase chain reaction (PCR) F087A = Quantitative polymerase chain reaction (QPCR) F080A = Enzyme‐linked immunosorbent assay (ELISA) F151A = Immunoblotting (IB) F590A = Immunoperoxidase test (IPT) F089A = Genotyping F563A = Virus isolation |
Encoding of the method or instrument used from the ANLYMD catalogue PCR – virus QPCR – virus Genotyping – virus Virus isolation – virus ELISA – antibodies Immunoblotting (IB) – antibodies Immunoperoxidase test (IPT) – antibodies |
| anMethText | Additional description of the method or instrument using free text, particularly if ‘other’ was reported for ‘Analytical method code’ | |
| resId (mandatory) | Unique identification of an analytical result | |
| specificity | Analytical method specificity if available | |
| sensitivity | Analytical method sensitivity if available | |
| resUnit | Unit of measurement the result value when reporting quantitative values | |
| resVal | The quantitative result of the analytical measure expressed in the unit specified in resUnit (e.g. CT or OD values) | |
| resQualValue (mandatory) |
POS = Positive NEG = Negative EQU = Questionable |
Qualitative result value Positive or negative |
| resType | BIN = Qualitative Value (Binary) | Indicate the type of result, whether it could be quantified/determined or not |
| resInfo |
Free text to provide additional comments on lab result Additional specific information and comments on the result section depending on specific requirements of the different data collection domains |
|
| ADNSId | Number of the outbreak notified to the ADNS system |