Table 2. WA PVL prophage lukSF-PV polymorphisms, prophage classifications and lysogen lineages.
| Prophage | Lysogen CC, ST |
Lysogen Genus/PVL gp. | SNPs | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| lukS-PV | lukF-PV | ||||||||||
| 33 | 105 | 345 | 443 | 527 | 663 | 1186 | 1396 | 1729 | |||
| ϕSLT | 30, ST30 | 3alikevirus/2 | G | T | C | G | A | G | C | A | A |
| ϕSa2wa-st30 | 30, ST30 | 3alikevirus/2 | G | T | C | G | A | G | C | A | A |
| ϕSa2wa-st772 | 1, ST772 | 77likevirus/1 | G | T | C | G | A | G | C | A | A |
| ϕSa2958 | 5, ST5 | 3alikevirus/2 | G | T | C | G | A | G | C | G | A |
| ϕSa2wa-st1 | 1, ST1 | 3alikevirus/2 | G | T | C | G | A | G | C | G | A |
| ϕSa2wa-st22 | 22, ST22 | 77likevirus/1 | G | T | C | G | A | G | C | G | A |
| ϕSa2wa-st59 | 59, ST59 | 77likevirus/3 | G | T | C | G | A | G | C | G | A |
| ϕSa2wa-st8 | 8, ST8 | 3alikevirus/2 | G | T | C | G | G | T | C | A | G |
| ϕSa2wa-st72 | 72, ST72 | 3alikevirus/2 | G | T | C | G | G | T | C | A | G |
| ϕSa2wa-st93 | S, ST93 | 3alikevirus/2 | G | T | C | G | G | T | C | A | G |
| ϕSa2wa-st93mssa | S, ST93 | 3alikevirus/2 | G | T | C | G | G | T | C | A | G |
| ϕSa2USA | 8, ST8 | 3alikevirus/2 | G | T | C | G | G | T | C | A | G |
| ϕSa2wa-st5 | 5, ST5 | 3alikevirus/2 | G | T | C | A | A | G | C | G | A |
| ϕSa2wa-st78 | 88, ST78 | 3alikevirus/2 | G | C | C | G | A | G | C | G | A |
| ϕSa2wa-st121mssa | 121, ST121 | 3alikevirus/2 | G | T | C | G | A | G | T | A | A |
| ϕSa2wa-st80 | 80, ST80 | 3alikevirus/2 | A | T | T | G | A | G | C | A | A |
| ϕSa2mw | 1, ST1 | 3alikevirus/2 | G | T | C | G | G | T | C | A | A |
Nucleotides differing from those of ϕSLT are shaded. Abbreviations: gp., group