Table 3. Alpha aligner defined nodes of ϕSa2wa-st93 and node-associated ORFs or intergenic regions having 97–100% sequence identity with other WA PVL prophages.

ϕSa2wa-st93 Position/Node*	Protein(s) accession no’s, HPs or regions	WA PVL bacteriophages with 97–100% sequence identity
22-1913/1	Integrase, AUM58227; Split HP, AUM58228	ϕSa2wa-st1, -st5, -st22, -st30, -st59, -st72, -st78, -st80 -st121mssa
1914-2140/2	Split HP, AUM58228; split HP AUM58229	ϕSa2wa-st5, -st72, -st78
2146-3307/5	Split HP, AUM58229; HP, AUM58230; HP, AUM58231; split Toxin, AUM58232	ϕSa2wa-st1, -st72
3308-4724/7	Split Toxin, AUM58232; HP, AUM58233; HP, AUM58234; HP, AUM58235	ϕSa2wa-st72
4725-4766/11	Intergenic region	ϕSa2wa-st1, -st5, -st30, -st59, -st72, -st78, -st80, -st121mssa
4767-5017/12	HP, AUM58236	ϕSa2wa-st72
5018-5060/13	Split HP, AUM58237	ϕSa2wa-st1, -st30, -st59, -st72, -st78
5061-5096/14	Split HP, AUM58237	ϕSa2wa-st1, -st5, -st30, -st59, -st72, -st78, -st80, ϕ -st121mssa
5097-5163/15	Split HP, AUM58237	ϕSa2wa-st5, -st30, -st59, -st72, -st78, -st80, -st121mssa
5341-5423/18	Split DUF1270, AUM58238	ϕSa2wa-st72, -st78
5424-5446/19	Split DUF1270, AUM58238	ϕSa2wa-st72, -st78
5472-5497/22	Intergenic region	ϕSa2wa-st72
5498-5828/23	HP, AUM58239; split DUF2482 HP, AUM58240	ϕSa2wa-st59, -st72
5829-6178/24	Split DUF2482 HP, AUM58240; split DUF1108 HP, AUM58241	ϕSa2wa-st72
6179-6361/25	Split DUF1108 HP, AUM58241	ϕSa2wa-st72
6362-6422/26	Split DUF1108 HP, AUM58241	ϕSa2wa-st5, -st59, -st72
6429-8560/27	HP, AUM58242; Cas4-like, AUM58243; DUF2815 HP, AUM58244	ϕSa2wa-st1, ϕ -st30, -st72, -st78, -st80, -st121mssa
8565-10659/28	DNA polymerase A, AUM58245; split DUF3113 HP, AUM58246	Sa2wa-st1, -st30, -st72, -st78, -st80, -st121mssa

Proteins and hypothetical proteins are indicated by their Genbank protein-id number. Genbank domains of unknown function are indicated; Split proteins represent split open reading frames. Abbreviations: DUF, domain of unknown function; HP, hypothetical protein; no’s, numbers

*As presented in Fig 4