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. 2020 Feb 4;10:1588. doi: 10.3389/fphys.2019.01588

TABLE 2.

Genes investigated in this study: primer location, sequences, and amplification efficiency.

Gene symbol Ensembl ID Gene name Forward primer; sequence Forward primer position
Atp5f1a ENSRNOG00000017032 ATP synthase F1 subunit alpha TGACCGAGCTGCTAAAGCAA 1,449–1,468
Cox4i1 ENSRNOG00000017817 Cytochrome c oxidase subunit 4i1 CCATGTTCTTCATCGGCTTCA 417–437
Cycs LOC100363502-201 Cytochrome c, somatic-like GGCTGCTGGATTCTCTTACACA 204–225
Gpx4 ENSRNOG00000013604 Glutathione peroxidase 4 AGGCAGGAGCCAGGAAGTAATC 496–517
Ppargc1a ENSRNOG00000004473 PPARG coactivator 1 alpha AAGGTCCCCAGGCAGTAGATC 1,906–1,926
Ppib ENSRNOG00000016781 Peptidylprolyl isomerase B GGCTCCCAGTTCTTCATAACTACAG 561–585
Sod2 ENSRNOG00000019048 Superoxide dismutase 2 TGCCGCCTGCTCTAATCAG 566–584

Gene symbol Reverse primer; sequence Reverse primer position Exon–exon boundary AE

Atp5f1a TGACAGCCACCTGTTCTTCAAT 1,511–1,490 Yes 1.96
Cox4i1 GGGCCATACACGTAGCTCTTCT 480–459 Yes 1.91
Cycs TTTCCAAATACTCCATCAGGGTATC 286–262 Yes 1.88
Gpx4 CAGATCTTGCTGTACATGTCAAACC 578–554 Yes 1.90
Ppargc1a GGTGTCTGTAGTGGCTTGATTCAT 1,973–1,950 Yes 1.89
Ppib ACCACATCCATGCCTTCCA 652–634 Yes 1.95
Sod2 CGTGCTCCCACACATCAATC 645–626 Yes 1.91

Gene sequences were taken from the Ensembl genome browser, and the positions corresponding to primer sequences (in 5′–3′ direction) are listed. Primer pairs were designed to span across an exon–exon boundary. The achieved amplification rate over three cycles in the geometric phase with each primer set is listed.