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. 2019 Nov 6;83(3):319–322. doi: 10.1097/QAI.0000000000002246

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Copyright © 2019 The Author(s). Published by Wolters Kluwer Health, Inc.

This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.

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FIGURE 2. — Sequence analysis of the CG-0018a-01 complete genome. A, HIV-1 group M maximum likelihood phylogenetic tree (7578 bp) shows the sequence of CG-0018a-01 groups with the 2 putative subtype L sequences with a bootstrap of 100. B, SimPlot (Window: 500 bp, Step: 50 bp) and Bootscan (Window: 500 bp, Step 100 bp) show % identity is highest to the putative subtype L reference sequences except in the well-conserved pol region (approximate positions 3500–4600). C, Results of neighbor-joining phylogenetic analysis of positions 3500–4600 show that the sequence of CG-0018a-01 continues to group with the putative subtype L sequences with a bootstrap of 97.