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. 2020 Feb 1;36(1):87–97. doi: 10.5423/PPJ.OA.10.2019.0268

Table 3.

Pairwise nucleotide and amino acid sequence distances between coat protein gene of representative Wisteria vein mosaic virus isolatesa

Isolateb Beijing WVMV-YZ-clone 2 SUX-1-HZ WVMV-JX WA New Zealand Netherlands Australia Th-W2259
Beijing 0.01140 0.01136 0.05976 0.01147 0.05983 0.07183 0.07183 0.05983
WVMV-YZ-clone 2 0.01942 0.02282 0.07199 0.02303 0.07208 0.08413 0.08413 0.07208
SUX-1-HZ 0.14947 0.17118 0.04733 0.02295 0.07183 0.05926 0.05926 0.07183
WVMV-JX 0.22151 0.20938 0.18937 0.05908 0.02264 0.01121 0.01121 0.02264
WA 0.16595 0.15510 0.14719 0.11682 0.05915 0.07102 0.07102 0.05915
New Zealand 0.20234 0.19080 0.20006 0.04811 0.12119 0.01128 0.01128 0.00000
Netherlands 0.20831 0.19660 0.19420 0.04387 0.12630 0.00381 0.00000 0.01128
Australia 0.20831 0.19660 0.19420 0.04387 0.12630 0.00381 0.00000 0.01128
Th-W2259 0.19723 0.18577 0.20497 0.05215 0.13590 0.01149 0.01539 0.01539
a

The nucleotide and amino acid sequence distances were assessed using Tamura three-parameter model with a gamma distribution of site-rate variants across four categories and Jones-Taylor-Thornton model, respectively in Mega 6.0 (Tamura et al. 2013). The nucleotide and amino acid distances are presented in the lower-left and upper-right of the table. A sequence of soybean mosaic virus (accession no. FJ640971) was used as the outgroup. Standard errors are not shown.

b

Isolates Beijing and WVMV-YZ-clone 2 belong to East Asian-1, SUX-1-HZ to East Asian-2, WVMV-JX to East Asian-3, WA to North American, and Australia, Netherlands, New Zealand and Th-W2259 (studied in this work) to World group (Fig. 2).